Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq37714 170 3e-37 seq26056 114 2e-20 >seq37714 Length=41178 Score = 170 bits (188), Expect = 3e-37 Identities = 216/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || | ||||||| | |||| || ||| | | || Sbjct 5165 GGAAGGCAGTGAAGGGACAGCCCTGGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCGG 5106 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||| | || |||||||| ||||||||||||||||| |||||||| | |||| Sbjct 5105 AGTTGACGATGTCGAAGCCCACGTCCCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 5046 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| | || |||| ||||| || ||||| ||||| || || | ||| | || Sbjct 5045 AGCAGATGGCATTGCCCATCAGGCCCTTCAGGGAGAACGGCGCTCCGATCTCCACCATCG 4986 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || ||||||||||| || || ||||| ||||| | | || | ||||| ||||| Sbjct 4985 TTTCTCCGAAGATGGCACCTGGGCGCGGCTTCTCCACGAGCAGGCCTGGGTACAGCTCCA 4926 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||||||||||||| || || || || || || || |||||||||| Sbjct 4925 TGGCGTCGATGTCTCCGTAAAGCTCCTCCAGCTCAGCTGCCATCTCTTTTTCTCCTG 4869 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || || || || || ||| |||||| ||||| | |||||| Sbjct 3235 ATGAGTCTAGCAGTTTGGAAGAGCTGCTCATCATCCCATTCCGGATGCACCTTTTTCAGG 3176 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || || || | |||||||||||| |||||||| || ||||||||||| || || || Sbjct 3175 ACGTCACAGACACGGTTGTGTTCCCTCAGCCAGATCGTGGCGTACATCATCAGGCCTGGG 3116 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||||| || | |||||| Sbjct 3115 ACCAAACCAAACACCTCCTGCCCCACAGAAAACTGCAGGTGCTCGGGGACGTGGGGAGGG 3056 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | |||| || || |||| || || |||||||| || ||||| ||| Sbjct 3055 TACAGCATCTCTGCCTGTGTGTCCTTCACCGTCGGAGGGTACATTTCTCCATCAATCATC 2996 Query 9862 TG 9863 || Sbjct 2995 TG 2994 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || | | || || || || | |||| || Sbjct 1294 ACCTTTAACACCCATCGGTGTTGGGCAGTCAAGCGCTACTGGTGGGAGGCTTCTTGTATA 1235 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| ||||||||| ||||||||||||| ||| |||||| |||||| | || Sbjct 1234 ATAGGAAAGATTGGAGTAAGCTTCCCAGCTCTTGTAACTGTAGTCACTGTTGTAAGTTGG 1175 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 |||||||||||||| | ||||| ||||| Sbjct 1174 TGGGCTGTCAATCAAGTGTGATCTTGCTGAA 1144 >seq26056 Length=16545 Score = 114 bits (126), Expect = 2e-20 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 |||||| || |||||| || || || ||||| | ||| |||| || ||| || Sbjct 7813 GGACACTTCTTCACGTTGAGGCACACAAGCTTCTGGAGCGATGCTGTCTTAACAATCTCA 7872 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || |||| || || || |||||||||||||| | |||||||||||| || Sbjct 7873 AAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTT 7932 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | || || || |||||||| ||||| || | ||| | ||||| || || || ||| Sbjct 7933 CCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATG 7992 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||||| |||| || |||| || || || | || ||||||| ||| || |||||| Sbjct 7993 CCATTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGATAAAACTCCAGAGCATCAATGTCT 8052 Query 8933 CCGTAAAG 8940 || || || Sbjct 8053 CCATACAG 8060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708047652830000