Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14405 120 4e-22 seq5984 111 2e-19 seq34970 89.7 7e-13 >seq14405 Length=70954 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||||||||| | ||| | Sbjct 59508 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATTAGGCCCCTCTTCT 59567 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 59568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCCACTGCAGCAAAGG 59627 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 59628 CAACCACTCTCTCACC 59643 >seq5984 Length=37620 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 3009 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 2950 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 2949 TCAGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 2890 Query 32803 C 32803 | Sbjct 2889 C 2889 >seq34970 Length=16158 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 ||||| ||||| ||||||||||||||||| || || | ||| || ||||||| ||| || Sbjct 8621 CACTCTCTTCATGAAGAGATCAGGAATCCAGAGTGCAAAAAAGAGGTCTCTGGCTCTCTG 8680 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || || ||||| || | || |||||| | | || || ||||| || Sbjct 8681 CTCTTCCTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAGGTGCCATGG 8740 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 8741 CTCCAGGTAGATGGCAAAAGCCCCAGG 8767 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||||||||| || || || ||||||||||| || | || || || || ||||| || Sbjct 7844 ATCTCAGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 7903 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || | ||||| || || ||| | ||||| ||||| || |||| || || || || Sbjct 7904 TTGCAGGAGTCCTTGTAGAGCATGTAAGGAGTGCCAGTCTCCGTCTGGGACTCGATGATG 7963 Query 62921 GCTTTCCAGA 62930 || | ||||| Sbjct 7964 GCATACCAGA 7973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633205288450000