Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq30931 172 1e-37 seq36098 84.2 4e-11 >seq30931 Length=27074 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||||| || || | ||||||| || | ||| || ||||| || || |||||||| | Sbjct 287 TTTAATAGCCACCCCTGAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGT 228 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || || | |||||| || | ||||||||| ||||| || || || || |||| Sbjct 227 AGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGT 168 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || ||||| ||||||||||| || ||||| ||||| ||| ||| ||||| || | Sbjct 167 CAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGG 108 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||| ||||||||| || || || |||||||| ||||| |||||||| Sbjct 107 GCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53 >seq36098 Length=1627 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || || || || || ||| |||||||||||| | || || || Sbjct 367 CCTTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGTTGGGCTCCACCTCT 308 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| |||||||| || || |||||||| Sbjct 307 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921001744915000