Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq34970 136 7e-27 seq14405 93.3 8e-14 seq5984 84.2 4e-11 >seq34970 Length=16158 Score = 136 bits (150), Expect = 7e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || ||||||||||||||| |||||| ||||| ||||| || | || |||||| Sbjct 5895 CACCCCCTTGCTGACGGGAGAGCCCTCATAGGTGTCATAGGGGCCCTGCTCCTTGGCCAG 5954 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || ||||| | || ||||| ||||||||||||||| ||||| || ||| | | Sbjct 5955 CTCGCAGCTGGCCTCCAGGGCACTGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAG 6014 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 |||||| | || |||||||| | ||| | |||||| | |||||||| ||||| Sbjct 6015 CTGGGCCTCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCATCGGCCAGGCCCTG 6074 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||||||| ||||| | ||| ||| |||||||||| Sbjct 6075 CACGCCGATGCCAATGGGGCGGTGGCGCCGGTTGGAGCGC 6114 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 7815 CCACCTCATCCTTGCTGGTGTACTCCACAATCTCAGTGCACAGGTTGCTGCACTTGATGG 7874 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| | || Sbjct 7875 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAAGGAG 7934 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || ||||| ||||| ||| || | | |||||| | | ||||| ||| || Sbjct 7935 TGCCAGTCTCCGTCTGGGACTCGATGATGGCATACCAGAGCTGCTGGGCCTTCACCACCC 7994 Query 244884 TGCG 244887 |||| Sbjct 7995 TGCG 7998 Score = 109 bits (120), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || || |||||||| || |||||||| |||| |||||| Sbjct 8622 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGTGCAAAAAAGAGGTCTCTGGCTCTCTGC 8681 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| ||| |||| || ||||||| ||| | |||||| ||| Sbjct 8682 TCTTCCTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAGGTGCCATGGC 8741 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 8742 TCCAGGTAGA 8751 >seq14405 Length=70954 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||||||||| |||| || Sbjct 59643 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTCTCGGGTTCCTTTGCT 59584 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || ||||| ||||| || ||||| || ||||| Sbjct 59583 GCTATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGACTGACTTTCTCCAATGAACTT 59524 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 59523 ATTAGCAGAGATGAGG 59508 >seq5984 Length=37620 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || |||||||| || ||| |||| || || || || ||| Sbjct 2886 GTAGCTTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCCTTTGCATCAATTTTTTGG 2945 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| ||| | | ||||| |||||||| || || || ||||||||||| || || Sbjct 2946 CTGAAGAAGAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 3005 Query 42828 GAGG 42831 |||| Sbjct 3006 GAGG 3009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943703246570000