Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq11599 96.9 3e-15 >seq11599 Length=78777 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || ||||| |||| ||| ||||| | || |||||||||||||| || ||||| Sbjct 73149 AGCCCTGTGACATGGGCAATCATGTAAGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 73208 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 ||||| | ||||| ||||| |||| |||||| || || || || | ||||| | | Sbjct 73209 ACTCCTAGTCCCATATCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTACA 73268 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 |||||||| || || | | || || || || | ||||||| Sbjct 73269 ACATAAAACTGGCAAAGGACATGGCATGGAGGCAAAGCCATCA 73311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCT-GTG 20592 || ||||||||||||||||||||||| || || |||||||||||||||||| ||| ||| Sbjct 76817 GCTCCAAAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCTCTGGTG 76876 Query 20593 CGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 | | || || |||||||||| | || ||||| ||||| ||||| || || Sbjct 76877 C-TGAAACCCTGCTTATCCAGGAACTCACGCGATCCATTAGCATCCCAAATCTTCACACC 76935 Query 20653 TGTTCTTGAAAGCTC 20667 | || || ||||| Sbjct 76936 TTTTGCAGAGAGCTC 76950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441075563005000