Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq37714 178 2e-39 seq26056 100 4e-16 >seq37714 Length=41178 Score = 178 bits (196), Expect = 2e-39 Identities = 217/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| |||| || ||| || ||||| ||| | || |||| Sbjct 5165 GGAAGGCAGTGAAGGGACAGCCCTGGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCGG 5106 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 || |||||||| || || ||||||||||||||||||||||| ||||||||| | |||| Sbjct 5105 AGTTGACGATGTCGAAGCCCACGTCCCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 5046 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| || || |||| ||| ||||| || || | ||| | || Sbjct 5045 AGCAGATGGCATTGCCCATCAGGCCCTTCAGGGAGAACGGCGCTCCGATCTCCACCATCG 4986 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || |||||||||||||| || ||||| || || |||| | ||| | ||| || || | Sbjct 4985 TTTCTCCGAAGATGGCACCTGGGCGCGGCTTCTCCACGAGCAGGCCTGGGTACAGCTCCA 4926 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||| ||| || || || | |||| ||| || || ||||| || || ||| Sbjct 4925 TGGCGTCGATGTCTCCGTAAAGCTCCTCCAGCTCAGCTGCCATCTCTTTTTCTCCT 4870 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 ||||| || | |||||| ||| |||||||||| || | | ||| || || || ||||| Sbjct 3223 GTTTGGAAGAGCTGCTCATCATCCCATTCCGGATGCACCTTTTTCAGGACGTCACAGACA 3164 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||||||||| |||||||| || |||||||||||||| | || || || ||||||||| Sbjct 3163 CGGTTGTGTTCCCTCAGCCAGATCGTGGCGTACATCATCAGGCCTGGGACCAAACCAAAC 3104 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| | ||| |||| | ||||| || | ||| | |||||||| | Sbjct 3103 ACCTCCTGCCCCACAGAAAACTGCAGGTGCTCGGGGACGTGGGGAGGGTACAGCATCTCT 3044 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 |||| || || || || || || || |||||||| || ||||| | ||| Sbjct 3043 GCCTGTGTGTCCTTCACCGTCGGAGGGTACATTTCTCCATCAATCATCTG 2994 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGG 9625 |||||| |||| ||||||||||||||||| || || |||||||||||||| || | || Sbjct 4299 TGCCAGTGGTACAGGGTATTGAACTCGGCTGCGATACGGTTCTGGTACTGGAACCGCTGG 4240 Query 9626 TACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGA 9685 | ||| || | ||| |||||||| | |||| ||||||||| || || | || || | Sbjct 4239 T--TGAATAGCAGCTCAGGGTCAAACTTGAGCTTGAAGTGGTAACCACTCAAGTGTTGCA 4182 Query 9686 CATA 9689 |||| Sbjct 4181 CATA 4178 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 10871 CCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATACCCCTCGA 10930 || |||| |||||| |||||| || |||||||| || | |||||||| ||||| | Sbjct 444 CCTGTCCTCGTACAGTCGCACTGGTACCGATCAAATCCTGCAGTCATGCACACCCCCCTG 385 Query 10931 TTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTGCAA 10967 |||||||| |||| || ||||||||||||||||||| Sbjct 384 TTCTGGCAGGGGTTTGAGCAGCAAGGGTTGGCTGCAA 348 >seq26056 Length=16545 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || || || || ||||||||||||||| | |||||||||||| || | | ||||| Sbjct 7885 CCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTTCCAAAAAGCCCC 7944 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || || ||| || ||| | Sbjct 7945 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATGCCATTGGGTTGG 8004 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | || | || | ||| || | ||| ||||| || || Sbjct 8005 GGTTTCTCCAGCAGCAAGCCTGGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 8064 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 8065 TCCAGCTCCGCTGCCTTCTCTTCCTCTCCTGCA 8097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723240614425000