Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3584 185 1e-41 >seq3584 Length=5034 Score = 185 bits (204), Expect = 1e-41 Identities = 735/1147 (64%), Gaps = 30/1147 (3%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || ||| | | ||| || || || || | || ||||| || || |||||||||||||| Sbjct 3905 TCTCCCATGAGGATAGCTGCCTGCACGGCAGCGCCGTACGCCACAGCCTCATCGGGGTTG 3964 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || || ||||| || || || | ||| || | | || || || ||| Sbjct 3965 ATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGAAGCTTCTGGATCTTGGGG 4024 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| |||| ||||| || | | | | || |||| ||| | | Sbjct 4025 ATACGAGTGGAGCCACCCACCAGCACGATCTCCTGGATCTGCCCCTTGTCGAGCTTGGCG 4084 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || | || || || || |||| ||||||| ||| || ||| Sbjct 4085 TCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCGCGGAACAGGTCGGCGTTGAGCTCC 4144 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || || || || ||||| || ||||| || | ||| || | | || || || Sbjct 4145 TCGAAGCGGGCGCGAGTGATGGAGGTGTAGAAGTCGATGCCCTCAAAGAGGGAGTCGATC 4204 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || ||| | | || ||| || || | || ||||| || ||||| || ||||| Sbjct 4205 TCGATGCTGGCCTG---CGTGGAGGAGCTGAGGGTGCGCTTGGCACGCTCGCAAGCCGTG 4261 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | || || |||||| | || || || ||| || || || || ||| Sbjct 4262 CGCAGCCGCCGCCCCGCACGC-----AACG---ATGTCGCGCTTGTGCTTGCGCTTGAAC 4313 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || || ||||| | | | ||| || || || || |||| ||| || || Sbjct 4314 TCCTCCACAAAGTGGTTCACCATGCGGTTATCAAAGTCCTCCCCGCCCAGGTGGGTGTCA 4373 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || || || | || ||||| ||||| || | || ||| | | | || ||||| || Sbjct 4374 CCAGCTGTGGACTTCACTTCGAAGATCCCATCCTCGATGGTGAGGATGGACACATCGAAA 4433 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTA 7600 || || || ||||||||||| ||||| |||||| | || || | | ||||| Sbjct 4434 GTGCCCCCTCCCAGGTCAAAGATGAGCACGTTCTTCTCCCCGGCCCGGGTCCCCTTCTTG 4493 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 || || || || || ||||| ||||| || || || || || || || | ||||||| Sbjct 4494 TCCAGGCCATAGGCTATAGCGGCCGCAGTGGGCTCGTTGATGATTCGCATCACGTTCAGG 4553 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || | || || | ||||| || || || || || || || ||||| ||||| || || Sbjct 4554 CCGGTGATGGTGCCGGCATCCTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTACGCGGGC 4613 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || | || |||| | || || || ||||| | ||||| || || ||||| Sbjct 4614 ACTGTGATCACAGCGTTCTGCACCTTGCGCCCCAGATAGGCCTCCGCAATCTCCTTCATC 4673 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAA 7839 ||||| || ||||| || ||||| || | | | | || ||| | || || || | Sbjct 4674 TTGGTCAGCACCATGGAGCTGATCTCCTCCG-GGAAGAAGGTCTTCATCTCCCCCTTGTA 4732 Query 7840 ATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTT 7899 || || | | | |||| || |||| | | | || | | ||| | || Sbjct 4733 CTCCACCTGCACCTTGGGCTT-GCCGC--CCTCATTCACCACGCGGAAGGGCCAGTGCTT 4789 Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959 ||| || || ||| |||| | |||| | ||||| || ||||| || || || Sbjct 4790 CATGTCCGACTGCACCGTGGGGTCATCATACTTGCGACCGATGAGGCGCTTGGCGTCGAA 4849 Query 7960 AACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 | ||||| |||||||||| || |||||||| || || |||||||| || || || Sbjct 4850 GATGGTGTTGGTGGGGTTCATCGCCACCTGGTTCTTGGCGGCATCCCCGATGAGCCGCTC 4909 Query 8020 ATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAA 8078 | || || || || ||||| | |||| || || || || || ||||| || || | Sbjct 4910 ---GGTGTCGGTGAAGGCCACGTA-GCTGGGCGTGGTGCGGTTGCCCTGGTCATTGGCGA 4965 Query 8079 TAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAA 8138 | || || || | ||| || ||||||| ||||| || ||||| || || | || | Sbjct 4966 TGATCTCCACCTTGCCGTGCTGGAAGACGCCCACGCAGGAGTACGTGGTGCCCAGGTCGA 5025 Query 8139 TACCGAT 8145 | ||||| Sbjct 5026 TGCCGAT 5032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634705077755000