Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18334 93.3 5e-14 seq9181 93.3 5e-14 seq34970 87.8 2e-12 >seq18334 Length=20352 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 219 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 161 >seq9181 Length=1969 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 844 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 902 >seq34970 Length=16158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375 ||| || ||| |||||| |||| ||| || || |||| |||| | ||| ||| || Sbjct 7819 CTCATCCTTGCTGGTGTACTCCACAATCTCAGTGCACAGGTTGCTGCACTTGATGGTGCC 7878 Query 110376 CAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACC 110435 || ||||| ||| || || |||||| | ||||| ||||||||||| || || || Sbjct 7879 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAAGGAGTGCC 7938 Query 110436 AGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468 ||| |||||||| |||| || ||||| | ||| Sbjct 7939 AGTCTCCGTCTGGGACTCGATGATGGCATACCA 7971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588579361475000