Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq11599 113 4e-20 seq5375 100 2e-16 >seq11599 Length=78777 Score = 113 bits (124), Expect = 4e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || ||||| ||||||| || Sbjct 76801 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATC 76860 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 76861 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGATCCATTAGCAT 76919 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 76920 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 76968 >seq5375 Length=2475 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||||||||| || || | ||| |||||||| ||||||||| ||||| || ||| Sbjct 294 TTGAGCTCCCTGCTTAGCACAATGTTGATCCTGTCCTTCAGAGGTCGGTTCTTCTCAGGG 235 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| | ||||| |||| | |||||||||||| Sbjct 234 ATGGAGAACCAGGTCTTCTTGCCCATGATCAGAGCATTCTGCTTGCCT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408349301045375