Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq34970 140 6e-28 seq10035 91.5 3e-13 >seq34970 Length=16158 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| ||||| ||||| || | | |||||||| |||||||||||||||||| Sbjct 5899 CCCTTGCTGACGGGAGAGCCCTCATAGGTGTCATAGGGGCCCTGCTCCTTGGCCAGCTCG 5958 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| ||||||| |||||||||||| ||||| || | | |||||| || | Sbjct 5959 CAGCTGGCCTCCAGGGCACTGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAGCTGG 6018 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| ||| | |||||| | | ||||| | ||| |||| ||||| ||||| || Sbjct 6019 GCCTCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCATCGGCCAGGCCCTGCACG 6078 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||| ||||| | ||| | | |||| || Sbjct 6079 CCGATGCCAATGGGGCGGTGGCGCCGGTTGGA 6110 Score = 116 bits (128), Expect = 7e-21 Identities = 126/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||| Sbjct 7832 GTGTACTCCACAATCTCAGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 7891 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || ||||||||||||||||| || | || ||||| |||| Sbjct 7892 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAAGGAGTGCCAGTCTCCGTCTGG 7951 Query 213648 GACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | | |||| |||||| | | |||||| ||||||| Sbjct 7952 GACTCGATGA--TGGCATACCAGAGCTGCTGGGCCTTCACCACCC 7994 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| || || || | ||| || || || ||||| |||| ||| | Sbjct 8622 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGTGCAAAAAAGAGGTCTCTGGCTCTCTGC 8681 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| || || || || || |||||||||||| |||||| ||| Sbjct 8682 TCTTCCTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAGGTGCCATGGC 8741 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 8742 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 8772 >seq10035 Length=23980 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/114 (78%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026 ||||| | |||||| |||||||||||||| || | |||||| ||||| | | ||| ||| Sbjct 214 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGCACAGTGTGGTCCTCCAGGTTCTTCTCTCTC 155 Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC---GGGGAAC 39077 ||||||| |||||||||| || || || ||||||||||| ||||||| Sbjct 154 ACCAGGTATGAGCTGATCAACTGCCCAATCTCCGTGGTTCTGTCTGTGGGGAAC 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930905470880000