Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq34970 96.9 6e-15 seq14405 91.5 3e-13 >seq34970 Length=16158 Score = 96.9 bits (106), Expect = 6e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| |||| | ||||| || || ||||||||||||||||||| Sbjct 7815 CCACCTCATCCTTGCTGGTGTACTCCACAATCTCAGTGCACAGGTTGCTGCACTTGATGG 7874 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| | ||| Sbjct 7875 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAAGGAG 7934 Query 221850 CGCCAGTCTCC 221860 |||||||||| Sbjct 7935 TGCCAGTCTCC 7945 >seq14405 Length=70954 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| |||||||| ||| ||||| ||||| || || || | Sbjct 59633 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCTATATTTT 59574 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| ||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 59573 GGCTGAAGAAGAGGGGCCTAATGCCTGGACTG-ACTTTCTCCAATGAACTTATTAGCAGA 59515 Query 26002 GACGAGG 26008 || |||| Sbjct 59514 GATGAGG 59508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928219281080000