Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq13421 228 9e-55 seq41690 87.8 2e-12 >seq13421 Length=129160 Score = 228 bits (252), Expect = 9e-55 Identities = 646/989 (65%), Gaps = 5/989 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| |||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 120095 TGTGCCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 120154 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || || || || || | Sbjct 120155 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAAATCCCCTACTCCAAAAA 120211 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||||| || || | ||| || ||| |||| || ||||| | || ||||| | || || Sbjct 120212 CGCAGACAGAGCGAACGTGAACTCCGCTGCACGGTGGGTAGGGTGCACCTTTGGACATGT 120271 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| |||| |||||||| ||||||||||| | || | |||||| || ||||| Sbjct 120272 CCCCTTCAAAGTATTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCGT 120331 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | | ||| ||||| || || | || || | ||| | || ||||||| Sbjct 120332 ACTTGTTGCTAGCAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 120391 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 ||| ||| || || ||||| || ||||| | ||| || ||||||| ||| ||| Sbjct 120392 GGTATTCATCTGGACTGTAAGTATCCTTTGCCCACTCAATGAACTGAAGTATTTTGCTGC 120451 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | |||| || | |||| | | ||||| || || ||||| || || | Sbjct 120452 TTTCTAATACGTATTCTACAAATCTTCTGCTAATTACAAAATAAGCACTGCCAGAAAAAA 120511 Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 | || | | ||| || | |||||| || ||||| | || | | Sbjct 120512 TTGGAGTACCCAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTGCCATCAA 120571 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | || | ||||||||||| || || | ||||| ||| || || | Sbjct 120572 TAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCCA 120631 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 ||||| |||| | || | ||||| | || || || || |||| ||||| | | Sbjct 120632 AGCTGTTTTCACCTTTAAGGGCTTTCAATTTCTCAACTATTTCCTGGTTGGTCTTTATAG 120691 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 ||||||| |||| || | ||||| | ||| ||||| || | || || || | Sbjct 120692 GAAAGTCCATACCACATAGATTTATGAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGAT 120751 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 | ||||||| ||||| ||||||||||| | ||||| ||||| || || || |||||| Sbjct 120752 CTTTCATGCAGTTAATGTCTGCCTGCACTCTACTCCATGAAGCATATACCACACTCTCTA 120811 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | ||||| | |||||| ||||| ||||| || || |||||| ||| | ||| || | Sbjct 120812 ACTGGCTGGCAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAAA 120870 Query 160825 ACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 | | || | | ||| ||| || || | ||| || | ||||| || || ||||| Sbjct 120871 AAAGATTCTGGAGATTTTTTGTCTACATGAATGCAGTAAAAATTCTGGGGAGCATAGATT 120930 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 120931 GATCTTAGGAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATT 120990 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 ||||| || | || || | || || | | | | ||| || | |||||| |||| Sbjct 120991 GGAAATTCTGCTTCTTCACTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTAAAG 121050 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 121051 GAGGCACAGTCTGCTGTCATGTTAATATA 121079 >seq41690 Length=853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 160304 GGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTA 160363 |||||| || ||||| ||||| || | ||||||||||| | ||| ||||| |||||||| Sbjct 853 GGCACCCGGCACGCCTGGCATGCGGTTCAGGGTGGCCCAGACGTGCTCGTCAGGGCTGTA 794 Query 160364 CGTGTCCTTAGACCATTCCATGAACT 160389 ||||||||||| ||| || | ||||| Sbjct 793 CGTGTCCTTAGCCCACTCGAGGAACT 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576830478945000