Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3584 271 1e-67 seq38988 104 3e-17 seq36098 93.3 6e-14 >seq3584 Length=5034 Score = 271 bits (300), Expect = 1e-67 Identities = 990/1535 (64%), Gaps = 41/1535 (3%) Strand=Plus/Minus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || ||||| ||||| || Sbjct 4975 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACC 4916 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || ||| | || |||||||| || || ||| || |||||||| | ||| Sbjct 4915 GACACCGAGCGGCTCATCGGGGATGCCGCCAAGAACCAGGTGGCGATGAACCCCACCAAC 4856 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| ||||| ||||| || || |||||||||| | || | || || Sbjct 4855 ACCATCTTCGACGCCAAGCGCCTCATCGGTCGCAAGTATGATGACCCCACGGTGCAGTCG 4796 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | || || || || | ||||| | | | | Sbjct 4795 GACATGAAGCACTGGCCCTTCCGCGTGGTGAA---TGAGGGCGGCAAGCCCAAGGTGCAG 4739 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCG-TCTATGGTGTT 195657 || || | | || |||| ||| | || ||||| || | | | || |||||| | Sbjct 4738 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCGGAGGAGATCAGCTCCATGGTGCT 4680 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 || ||||||||||||| |||||| | | |||| | ||| | | || || | Sbjct 4679 GACCAAGATGAAGGAGATTGCGGAGGCCTATCTGGGGCGCAAGGTGCAGAACGCTGTGAT 4620 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || ||||||| || || || || ||||| || ||||| || | | || Sbjct 4619 CACAGTGCCCGCGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGCACCAT 4560 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 | || || ||| | |||| ||||| || || || ||||| || || || ||||| Sbjct 4559 CACCGGCCTGAACGTGATGCGAATCATCAACGAGCCCACTGCGGCCGCTATAGCCTATGG 4500 Query 195838 TCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 ||||||||||| | || || || || || || | |||||||| || || || Sbjct 4499 CCTGGACAAGAAGGGGACCCGGGCCGGGGAGAAGAACGTGCTCATCTTTGACCTGGGAGG 4440 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 || || || ||||| || | |||| || || | ||| || |||||||| ||| | || Sbjct 4439 GGGCACTTTCGATGTGTCCATCCTCACCATCGAGGATGGGATCTTCGAAGTGAAGTCCAC 4380 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGT 196010 |||||||| || || || || || || || || ||| || | | || ||||| Sbjct 4379 AGCTGGTGACACCCACCTGGGCGGGGAGGACTTTGATAACCGCATGGTGAACCACTTTGT 4320 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || |||||| || ||| | ||| || || || | || || | Sbjct 4319 -GGAGGAGTTCAAGCGCAAGCACAAGCGCGACATCGTTG--------CGTGCGGGGCGGC 4269 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAACAA 196127 |||| | || || || || |||||||| || || || ||| || ||| || | | Sbjct 4268 GGCTGCGCACGGCTTGCGAGCGTGCCAAGCGCACCCTCAGCTCCTCCACG---CAGGCCA 4212 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 | ||||| || || | ||||| || || |||||||| || | || || || || | Sbjct 4211 GCATCGAGATCGACTCCCTCTTTGAGGGCATCGACTTCTACACCTCCATCACTCGCGCCC 4152 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 | || || ||| | ||| | || |||| | |||| || || || | | | Sbjct 4151 GCTTCGAGGAGCTCAACGCCGACCTGTTCCGCGGCACCCTGGAGCCGGTGGAGAAGGCTC 4092 Query 196248 TTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA 196307 | |||||||| ||| | || ||| || | | || || || || ||||| || || | Sbjct 4091 TGCGTGACGCCAAGCTCGACAAGGGGCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCCA 4032 Query 196308 CCCGTATTCCGAAGATTCAACAGATGCTT-TCTAG--CTTCTTCAATAATAAAGATTTAA 196364 | ||||| || ||||| |||| |||| | || |||||||||| ||||| | | Sbjct 4031 CTCGTATCCCCAAGAT---CCAGAAGCTTCTACAGGACTTCTTCAATGGCAAAGAGCTCA 3975 Query 196365 ACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTC 196424 |||| | |||||||| ||||| || || || || || || ||||| ||||| ||||| Sbjct 3974 ACAAGAGCATCAACCCCGATGAGGCTGTGGCGTACGGCGCTGCCGTGCAGGCAGCTAT-- 3917 Query 196425 TCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCG 196481 |||| | | ||||| | | ||||| || ||||| ||||| || ||||| | ||| Sbjct 3916 CCTCATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGCTAGATGTCACCCCCC 3858 Query 196482 TATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAA 196541 | |||||||| | || || || || || || ||||| | || | | ||||| | Sbjct 3857 TGTCCCTGGGCATCGAGACGGCTGGAGGAGTGATGACAGCTCTCATCAAGCGCAACACCA 3798 Query 196542 CTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTT 196600 | || || || || | || ||| | || || || || || || | || | || Sbjct 3797 CCATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCGGACAACCAGAGCA-GCGTC 3739 Query 196601 CATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACT 196660 | | || || || || || || | || | ||||||||| | | || || | Sbjct 3738 CTGGTCCAGGTGTACGAGGGTGAGAGGGCCATGACGAAGGATAACAACTTGCTGGGCAAG 3679 Query 196661 TTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTC 196720 ||||| | || || || || | |||||| | || || || ||||| | || || Sbjct 3678 TTCGACCTCACAGGCATCCCCCCAGCACCCCGGGGAGTGCCCCAGATCGAGGTCACTTTT 3619 Query 196721 GATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT 196780 || || || || || || || || ||||||| || | ||||||| | ||||| Sbjct 3618 GACATCGATGCCAACGGCATCCTGAACGTCAGCGCCGTGGACAAGAGCACGGGCAAGGAG 3559 Query 196781 GAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATG 196840 | ||||| || |||||||||||||| || || ||||| || || || || ||| Sbjct 3558 AACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATCGACCGCATG 3499 Query 196841 GTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || ||||| || || ||||||| | || ||||| Sbjct 3498 GTGCAAGAAGCAGAGAAGTACAAAGCTGAGGACGA 3464 >seq38988 Length=71893 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || |||||||| || || || |||| ||||| || || ||||| |||||||| ||| Sbjct 70435 GCTGTGGTGACTGTCCCAGCCTATTTCAACGATTCCCAGCGTCAGGCTACAAAGGATGCT 70376 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | ||||| || || || |||| | ||||| ||||| || || ||||| ||||| || Sbjct 70375 GGAACCATTGCAGGCCTCAA-TGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCAT 70317 Query 195829 TGCTTATGGTCTGGACAAGAA 195849 || ||||| ||||||||||| Sbjct 70316 AGCCTATGGGCTGGACAAGAA 70296 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || |||||||||||||| | | || ||||||| ||| | | || || | ||||| Sbjct 68456 CAGGTCTATGAAGGAGAACG-TGCTATGACAAAGGACAACAACTTGCTGGGCAAGTTCGA 68398 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 |||| |||||||| | || ||||| ||||| || |||||| | || ||| || || Sbjct 68397 GCTGACTGGGATTCCCCCAGCTCCCAGGGGTGTCCCTCAGATTGAAGTCACCTTTGACAT 68338 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 || || ||||| || || ||||| | |||| ||| ||| ||||||| | || Sbjct 68337 CGATGCCAATGGCATCCTGAACGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAA 68278 Query 196786 GATTGTGATTACCAATGACAAGGG 196809 ||| || || ||||||||||| Sbjct 68277 GATCACCATCACAAATGACAAGGG 68254 >seq36098 Length=1627 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || ||||| |||||||| ||||| ||| | Sbjct 264 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAAC 323 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | |||||||| || || || |||||||| Sbjct 324 GACACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAAGG 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657419370790000