Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21669 158 1e-32 seq15378 158 1e-32 seq13324 158 1e-32 seq37367 152 6e-31 seq13201 149 8e-30 seq10312 129 7e-24 seq34970 104 3e-16 seq38618 87.8 2e-11 >seq21669 Length=6189 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| || | | || Sbjct 5482 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGA 5423 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || || ||| ||||||| |||| | Sbjct 5422 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGA 5363 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 5362 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGT 5303 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 5302 GCACCTGCTTCAGCACCTTGTA 5281 >seq15378 Length=1652 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| || | | || Sbjct 639 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGA 580 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || || ||| ||||||| |||| | Sbjct 579 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGA 520 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 519 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGT 460 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 459 GCACCTGCTTCAGCACCTTGTA 438 >seq13324 Length=9936 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| || | | || Sbjct 547 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGA 488 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || || ||| ||||||| |||| | Sbjct 487 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGA 428 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 427 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGT 368 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 367 GCACCTGCTTCAGCACCTTGTA 346 >seq37367 Length=1555 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| || | | || Sbjct 442 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGA 383 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| || || ||| ||||||| |||| | Sbjct 382 TGGTGGAGCGCTTGTTGTAGTGTGCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGA 323 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 322 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGT 263 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 262 GCACCTGCTTCAGCACCTTGTA 241 >seq13201 Length=1196 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| || | | || Sbjct 840 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGA 781 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || || ||| ||||||| |||| | Sbjct 780 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGA 721 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | || |||||||| ||| |||| Sbjct 720 TGTCGTTGACGAAGGAGTTCATGATACTCATGGCTTTAGATGAGATGCCAGTGTCAGGGT 661 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 660 GCACCTGCTTCAGCACCTTGTA 639 >seq10312 Length=43032 Score = 129 bits (142), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| || | | || Sbjct 15482 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGA 15423 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| || ||| || ||||||| || | | Sbjct 15422 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGAGAGGCTTCTCCAGCGATGCGCTCAAAGA 15363 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| ||| || | Sbjct 15362 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGAT 15303 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 15302 GGACCTGCTTCAGCACCTTGTAGA 15279 >seq34970 Length=16158 Score = 104 bits (114), Expect = 3e-16 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| |||||||||||| || | | || |||||||||||||||||| | || Sbjct 7841 ACAATCTCAGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 7900 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| ||||||||| || | ||| ||||| |||| | | ||| | Sbjct 7901 CTGTTGCAGGAGTCCTTGTAGAGCATGTAAGGAGTGCCAGTCTCCGTCTGGGACTCGATG 7960 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCC 1628333 ||||| |||||| ||| | || ||| || | ||| ||||||| Sbjct 7961 ATGGCATACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCC 8007 >seq38618 Length=421 Score = 87.8 bits (96), Expect = 2e-11 Identities = 119/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 512000 GTGCTGGGCATCGAGGCCGCCGTGGCCGTGCTCTTTTCCGAGA--TCAAGGCCGTCATCT 512057 || |||||||||||||||| | || ||||| || || || | |||||||| Sbjct 47 GTCCTGGGCATCGAGGCCGT--TCGCAAAGCTCTGGAACGGGAACTCTACCACGTCATCT 104 Query 512058 CCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCT 512117 |||| ||||| ||||||||||| | || ||| | || ||| |||||||||| | Sbjct 105 CCTTCGACGGTTCCTACGTCAACTATCGTCACCTGGCTCTGCTGTGCGACACCATGACGT 164 Query 512118 GCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||||| || ||||| |||||||||||||| |||||||| Sbjct 165 CCCGCGGTCACCTGATGGCCATCACGCGCCACGGCGTCAACCGC 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102717965203375