Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13201 214 3e-49 seq21669 206 4e-47 seq15378 206 4e-47 seq13324 206 4e-47 seq37367 201 2e-45 seq10312 183 5e-40 seq36257 134 2e-25 seq34970 91.5 2e-12 >seq13201 Length=1196 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 879 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 820 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 819 GCAGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 760 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| || ||| ||||||| |||| ||||||||||| || ||||||| Sbjct 759 GCGCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 700 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 699 TGATACTCATGGCTTTAGATGAGATGCCAGTGTCAGGGTGCACCTGCTTCAGCACCTTGT 640 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 639 ACACGTAGATCGAGTA 624 >seq21669 Length=6189 Score = 206 bits (228), Expect = 4e-47 Identities = 191/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 5519 TACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCAGC 5460 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | || Sbjct 5459 AGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGATGGTGGAGCGCTTGTTGTAGTGC 5400 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||||||| || ||| ||||||| |||| ||||||||||| || ||||||||| Sbjct 5399 GCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATG 5340 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| ||| |||||||||||||| ||||||||||| Sbjct 5339 ATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGTGCACCTGCTTCAGCACCTTGTAC 5280 Query 1485712 AC 1485713 || Sbjct 5279 AC 5278 >seq15378 Length=1652 Score = 206 bits (228), Expect = 4e-47 Identities = 191/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 676 TACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCAGC 617 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | || Sbjct 616 AGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGATGGTGGAGCGCTTGTTGTAGTGC 557 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||||||| || ||| ||||||| |||| ||||||||||| || ||||||||| Sbjct 556 GCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATG 497 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| ||| |||||||||||||| ||||||||||| Sbjct 496 ATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGTGCACCTGCTTCAGCACCTTGTAC 437 Query 1485712 AC 1485713 || Sbjct 436 AC 435 >seq13324 Length=9936 Score = 206 bits (228), Expect = 4e-47 Identities = 191/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 584 TACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCAGC 525 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | || Sbjct 524 AGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGATGGTGGAGCGCTTGTTGTAGTGC 465 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||||||| || ||| ||||||| |||| ||||||||||| || ||||||||| Sbjct 464 GCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATG 405 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| ||| |||||||||||||| ||||||||||| Sbjct 404 ATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGTGCACCTGCTTCAGCACCTTGTAC 345 Query 1485712 AC 1485713 || Sbjct 344 AC 343 >seq37367 Length=1555 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 481 TGTACTTGGTAACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 422 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 421 GCAGCAGGCGCACGGCTGTCTGGATCTCCCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 362 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| || ||| ||||||| |||| ||||||||||| || ||||||| Sbjct 361 GTGCCAGGCGCGAAGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 302 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 301 TGATGCCCATGGCCTTGGACGAGATGCCAGTGTCAGGGTGCACCTGCTTCAGCACCTTGT 242 Query 1485710 AAAC 1485713 | || Sbjct 241 ACAC 238 >seq10312 Length=43032 Score = 183 bits (202), Expect = 5e-40 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||||||||| || ||| ||||||| || || | | Sbjct 15521 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACAGCATGCTTGGCCAGCTCTCCTGGGA 15462 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 15461 GCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 15402 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||| || ||||||| || | |||||||||||||| ||||||| Sbjct 15401 GGGCCAGGCGAGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 15342 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| || || |||||||| |||||||||| Sbjct 15341 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGATGGACCTGCTTCAGCACCTTGT 15282 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 15281 AGACATAGATGGAGTA 15266 >seq36257 Length=37845 Score = 134 bits (148), Expect = 2e-25 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 13758 TGTACTTGGTGACAGCCTTGGTGCCCTCAGAGACAGCGTGCTTGGCCAGCTCTCCGGGCA 13699 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || ||||| | ||| ||| || ||| ||| |||| | ||| || | Sbjct 13698 GCAGGAGCCTGACTGCTGTCTGCACCTCACGGCTGGTGATGGTGCTGCGGTGGTT-GTAC 13640 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| ||||||| | | | | || |||| ||||| |||| || |||||| Sbjct 13639 TGAGCCAGGCGCGCGGCCTCCGAGGCCAGTCGCTCGAAGATGTCATTGATGAAGGAGTTC 13580 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||| || | ||| ||||||||||| Sbjct 13579 ATGATGCTCATAGCCTTGGAAGAGATTCCAATGTCCAGGTGCACCTGC 13532 >seq34970 Length=16158 Score = 91.5 bits (100), Expect = 2e-12 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 2070060 GTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTCCCACGGCA 2070118 |||||| ||||||||||| |||| |||||||| | | || ||| |||||| | || | Sbjct 5982 GTAGATGGTCTCAAAGAT-GTGCTGGTTGAGGAGCTGGGCCTCGGGGCTCTCGAAGGGGA 6040 Query 2070119 GGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGC 2070178 ||| | | || || |||||||||||||||||||||| ||| || || ||||||| Sbjct 6041 ACCTCATGAGGATGAAGGCATCGGCCAGGCCCTGCACGCCGATGCCAATGGGGCGGTGGC 6100 Query 2070179 GCAGGTTCGAGTGC 2070192 || |||| ||| || Sbjct 6101 GCCGGTTGGAGCGC 6114 Score = 87.8 bits (96), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||| |||||||||||| || | ||||||||||||||||||||||||| || ||| Sbjct 7846 CTCAGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTT 7905 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | || |||||||| |||||||| || | || ||||| |||| | | || |||||| Sbjct 7906 GCAGGAGTCCTTGTAGAGCATGTAAGGAGTGCCAGTCTCCGTCTGGGACTCGATGATGGC 7965 Query 2071704 CGACCA 2071709 |||| Sbjct 7966 ATACCA 7971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910515470526125