Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4011 111 2e-19 seq20267 107 3e-18 seq9037 105 9e-18 seq42764 104 3e-17 >seq4011 Length=13631 Score = 111 bits (122), Expect = 2e-19 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||| Sbjct 9083 ATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 9024 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 9023 TCCCCGACGGGGAG 9010 Score = 105 bits (116), Expect = 9e-18 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 9086 CCCATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 9027 Query 11784 GATTCCCCGACGAGGAGG 11801 |||||||||||| ||||| Sbjct 9026 GATTCCCCGACGGGGAGG 9009 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| | |||| |||||||| |||||| Sbjct 9007 CACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 9066 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 9067 CTATACTAACGAGGA 9081 >seq20267 Length=19790 Score = 107 bits (118), Expect = 3e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 180 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 121 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 120 CCCGACGGGGAG 109 Score = 102 bits (112), Expect = 1e-16 Identities = 71/78 (91%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 184 CCCA-TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 126 Query 11784 GATTCCCCGACGAGGAGG 11801 |||||||||||| ||||| Sbjct 125 GATTCCCCGACGGGGAGG 108 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 109 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 168 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 169 TACTAACGAGGAT 181 >seq9037 Length=14622 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 150 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 209 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 210 CCCCGACGGGGAG 222 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 151 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 210 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 211 CCCGACGGGGAGG 223 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 222 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 163 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 162 TACTAACGAGGA 151 >seq42764 Length=1626 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 187 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 246 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 247 CCCCGACGGGGAGG 260 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 188 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 247 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 248 CCCGACGGGGAG 259 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 259 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 200 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 199 TACTAACGAGGA 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652405149830000