Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq13421 181 1e-40 seq19159 140 4e-28 seq41690 109 6e-19 >seq13421 Length=129160 Score = 181 bits (200), Expect = 1e-40 Identities = 584/901 (65%), Gaps = 18/901 (2%) Strand=Plus/Plus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || | |||||| ||| || ||||| || || || ||||| || ||||||||| Sbjct 120184 ATCCAGTTCAAATCCCCTACTCCAAAAACGCAGACAGAGCGAACGTGAACTCCGCTGCAC 120243 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | || ||||| || ||||||||||||| || ||||| Sbjct 120244 GGTGGGTAGGGTGCACCTTTGGACATGTCCCCTTCAAAGTATTGCCACTTGACAAACCTG 120303 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACA 162339 | | || | |||||| || ||||||||||| | | || || || || || Sbjct 120304 GCCAGTGCATTCATGTCAGAAACGTCGTACTTGTTGCTAGCAGAAACTGCACCTGGGACT 120363 Query 162340 CCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGAC 162399 | || | |||||| | || |||||||||| ||| |||||||| || || ||||| | | Sbjct 120364 TCAGGGATTCTCTGAATTGTTGCCCACAGGTATTCATCTGGACTGTAAGTATCCTTTGCC 120423 Query 162400 CACTCCATGAACTCCCTGACCGTTTTATCGTATAGAAT--GTAAGAGACGTAGGACCTGG 162457 ||||| ||||||| | ||| | | | ||| ||| || | ||| Sbjct 120424 CACTCAATGAACTGAAGTA--TTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCTGC 120481 Query 162458 TCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGT 162517 | | | ||| || || || |||||||| | || | | | ||| || | | ||||| Sbjct 120482 TAATTACAAAATAAGCACTGCCAGAAAAAATTGGAGTACCCAGAGGTGGTAGTTGTTTGT 120541 Query 162518 CTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCA 162577 || || ||||| || | || || | | | | || ||| ||||||| Sbjct 120542 CTATGCCTGTGTTCTTTATTTTGCCATCAATAATCTCATGGTGTTTCTTCCACCT----T 120597 Query 162578 TCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTC 162633 ||| | || || || | ||| || || | ||||| ||| | ||| ||| Sbjct 120598 ACTTCTTTATAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTC 120657 Query 162634 AGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATA 162693 | | || || || | |||||||| | |||||||| | || || ||||| || Sbjct 120658 AATTTCTCAACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATACCACATAGATTTATG 120717 Query 162694 ACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGG 162753 | |||||||| || || || ||| ||||| | | ||||| | || ||||| Sbjct 120718 AGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGC 120777 Query 162754 ACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCG 162813 || | |||||| || || || || || ||||| ||| |||| | ||||||||| || Sbjct 120778 ACTCTACTCCATGAAGCATATACCACACTCTCTAACTGGCTGGCAATAAAGACATTATCA 120837 Query 162814 AAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCT 162870 ||||| || ||||| ||| |||| | ||| | || | || || | ||| | ||| Sbjct 120838 AAACATGAGACTATTCCCTTCACAG-CAGCAAAAAAAGATTCTGG--AGATTTTTTGTCT 120894 Query 162871 ACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATC 162930 || || | |||||| | |||||| || || ||||| | || || | ||| || | |||| Sbjct 120895 ACATGAATGCAGTAAAAATTCTGGGGAGCATAGATTGATCTTAGGAGTCTATCAAGCATC 120954 Query 162931 TCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTG 162990 || || || || | ||||| || || || || || || || || || || || | ||| Sbjct 120955 TCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCACTGCTG 121014 Query 162991 AGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTA 163050 |||| | ||| ||| || | | | ||| | |||||||| | ||||||||| Sbjct 121015 AGAGGTTCCATAATGTATTTCCTAGTCTTGGTAAAGGAGGCACAGTCTGCTGTCATGTTA 121074 Query 163051 A 163051 | Sbjct 121075 A 121075 >seq19159 Length=73548 Score = 140 bits (154), Expect = 4e-28 Identities = 381/577 (66%), Gaps = 11/577 (2%) Strand=Plus/Plus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 |||||| ||||||| |||||| || | |||||| || || || |||||||| | || || Sbjct 50021 CACGTGTATGAAAGAGTCTCCTGGAATGTAATTCTCATAGTTTTCTCTCGAAGGGCCCAG 50080 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | || || | || |||| ||||| ||| ||||| || || || || || | Sbjct 50081 TACAACTGGAACAGATCCAGCCAGAAGAGCATTGTAAAGTTTCTCAGTGATGTAATCTTT 50140 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGA--AGATAGTAGCGGGATGAAG 177152 ||| | || |||||||| | || |||||||| || | ||||||| | | || ||| Sbjct 50141 GTGGATTGAATTCTCAAAGGAAAGGTAGAATTTGCAAGTGGAGATAGTTG--GAATCAAG 50198 Query 177153 TCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTA 177212 | | |||| | ||| ||||| | | | || || || || || |||| ||| Sbjct 50199 TTTTTATCGTTGACATAGTCTCCAAAGGCTTGTCCATAGGTGTGGATTTCAATGTATTTG 50258 Query 177213 CTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCA 177271 |||||||| ||| || || || || |||| || |||||| || || || ||||| Sbjct 50259 CTGAGCTCGTTGTAATA-CTTGACTCGAGCGTGCTCAGGGTTCCAGTTACTTACAACCCA 50317 Query 177272 GCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAATGCAGTGTCTCTGAGCGT 177331 || || || || ||| || || ||| | | | | | | || | | Sbjct 50318 ACAGACCAAGTTTTCCTTACTTGGTAC----TTCAAATGTGAAGGAACTTGTCCCAACCA 50373 Query 177332 TAGTGAT-CCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | ||| ||||| ||||| |||||||| || || || | ||| || | || || |||| Sbjct 50374 TCATGAAGCCATAAGGCACCTGAATATCTGAATCACGCCGGTAAGTCAGGGTCAGGTTGA 50433 Query 177391 AAAGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATA 177450 | |||| ||| ||||| ||| || | | | | || || || ||||||||||| | Sbjct 50434 AGAGGTGTTCGATACCACTTTTCTGCGGAGTATGAGTTGGAGACTCCAAGTTCATCCAAA 50493 Query 177451 TCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATCT 177510 ||||||| || || | ||| |||| || | ||||| | || |||| || || | Sbjct 50494 TCCACTTCTGGAATGGTGGCCTGGCTTGCTGAGGTAAATTAGTCAGATCCCAGCTAATGT 50553 Query 177511 CTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATA 177547 | ||||| |||| || || || | || | ||| ||| Sbjct 50554 CCCTGTGATGAATGAGAACAGCGTGGGATCTGTTATA 50590 >seq41690 Length=853 Score = 109 bits (120), Expect = 6e-19 Identities = 260/389 (67%), Gaps = 12/389 (3%) Strand=Plus/Minus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| || ||| || ||||||| ||| || ||||| |||||||| | ||| Sbjct 573 CTGTTCCGTCCCTGCAGCACCTTCAGGGCACGGACAATCTCGGCGTTGGTCTTGATGGGG 514 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG---TCCGTA-CAG 162725 ||||||||||||||| || | | || ||| | || || || | | ||| Sbjct 513 AAGTCGGTGCCGCAGGTGTTGAGGATGTAGCGCCA----AGGCACAGGGCTCTGCAGCAG 458 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 ||||| | ||||| || || ||||| | || ||| || || || || ||||| || Sbjct 457 GTCCTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGACCACGCTTTC 398 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 || | | |||| || ||||| ||| ||| || | || || ||| ||| Sbjct 397 CAGGCGACTGGCCACGAAGACGTTGGGGAAGCAGCCTGCGATGGCCCGCACAGCCTCCTG 338 Query 162846 GAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 ||| || | || | || || || | ||| || ||||| | |||||| || |||||| Sbjct 337 GAATTCAGCCGGG--GACTTGCTGTCGATGTGGACACAGTAGATATTCTGGGGAGCGTAG 280 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 | | || ||| | |||||||||||||| || || | ||| | ||| || || || || Sbjct 279 AGAGACCGCAGGAGCCTCTCGAACATCTCGATTTTGTTGTGGATCACCATGGAGTAAGCG 220 Query 162964 ATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 ||||||||||| |||||||| | ||||| Sbjct 219 ATGGGGAACTCTGCCTCCTCTTGGCTGAG 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578042462200000