Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq21669 185 1e-40 seq15378 185 1e-40 seq13324 185 1e-40 seq37367 179 5e-39 seq13201 176 6e-38 seq10312 149 9e-30 seq34970 107 3e-17 seq36257 98.7 1e-14 >seq21669 Length=6189 Score = 185 bits (204), Expect = 1e-40 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || ||| |||| || |||| ||||| Sbjct 5281 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC---TGG--CATC-TCGTCCAAGGCCATG 5334 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||| || ||| Sbjct 5335 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCTTCGCGC 5394 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | || ||||||||||| ||||||||| Sbjct 5395 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGGGAGATCCAGACAGCCGTGCGC 5454 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 5455 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 5503 >seq15378 Length=1652 Score = 185 bits (204), Expect = 1e-40 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || ||| |||| || |||| ||||| Sbjct 438 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC---TGG--CATC-TCGTCCAAGGCCATG 491 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||| || ||| Sbjct 492 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCTTCGCGC 551 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | || ||||||||||| ||||||||| Sbjct 552 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGGGAGATCCAGACAGCCGTGCGC 611 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 612 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 660 >seq13324 Length=9936 Score = 185 bits (204), Expect = 1e-40 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || ||| |||| || |||| ||||| Sbjct 346 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC---TGG--CATC-TCGTCCAAGGCCATG 399 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||| || ||| Sbjct 400 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCTTCGCGC 459 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | || ||||||||||| ||||||||| Sbjct 460 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGGGAGATCCAGACAGCCGTGCGC 519 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 520 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 568 >seq37367 Length=1555 Score = 179 bits (198), Expect = 5e-39 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || ||| |||| || |||| ||||| Sbjct 241 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC---TGG--CATC-TCGTCCAAGGCCATG 294 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||| || ||| Sbjct 295 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCTTCGCGC 354 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | || ||||||||||| ||||||||| Sbjct 355 CTGGCACACTACAACAAGCGCTCCACCATCACCTCTCGGGAGATCCAGACAGCCGTGCGC 414 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 415 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 463 >seq13201 Length=1196 Score = 176 bits (194), Expect = 6e-38 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || ||| || || || || ||||| Sbjct 639 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC---TGGCATCTCATCTAA--AG-CCATG 692 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||| || ||| Sbjct 693 AGTATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCTTCGCGC 752 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | || ||||||||||| ||||||||| Sbjct 753 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGGGAGATCCAGACAGCCGTGCGC 812 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 813 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 861 >seq10312 Length=43032 Score = 149 bits (164), Expect = 9e-30 Identities = 181/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| || || || ||| |||| Sbjct 15266 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCATCCTGACAC---TGG--CATC- 15319 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| |||||||||||||| | || ||||||| Sbjct 15320 TCCTCCAAGGCCATGGGCATCATGAACTCCTTTGTCAACGACATCTTTGAGCGCATCGCT 15379 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| ||||||||| | | |||||||||| ||| ||| | | || ||||| Sbjct 15380 GGAGAAGCCTCTCGCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATT 15439 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| ||| || ||||| |||||| Sbjct 15440 CAGACAGCCGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCATGCTGTCTCAGAGGGC 15499 Query 725139 ACCA 725142 |||| Sbjct 15500 ACCA 15503 >seq34970 Length=16158 Score = 107 bits (118), Expect = 3e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||| ||||| || |||||| ||||| Sbjct 7977 CAGCTCTGGTATGCCATCATCGAGTCCCAGACGGAGACTGGCACTCCTTACATGCTCTAC 7918 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 7917 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 7859 Query 262210 CCTGTGCACCGAGATCGT 262227 ||||||||| ||||| || Sbjct 7858 CCTGTGCACTGAGATTGT 7841 >seq36257 Length=37845 Score = 98.7 bits (108), Expect = 1e-14 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | ||| ||||||||||| || |||| ||||| |||| || | | | | || Sbjct 13562 CAAGGCTATGAGCATCATGAACTCCTTCATCAATGACATCTTCGAGCGACTGGCCTCGGA 13621 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||||| |||||||| | | |||| | |||| ||| ||| || || ||| | ||||| Sbjct 13622 GGCCGCGCGCCTGGCTCAGTACAACCACCGCAGCACCATCACCAGCCGTGAGGTGCAGAC 13681 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | || | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 13682 AGCAGTCAGGCTCCTGCTGCCCGGAGAGCTGGCCAAGCACGCTGTCTCTGAGGGCACCA 13740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172614857227750