Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq37714 111 2e-19 >seq37714 Length=41178 Score = 111 bits (122), Expect = 2e-19 Identities = 198/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 4877 AAAGAGATGGCAGCTGAGCTGGAGGAGCTTTACGGAGACATCGACGCCATGGAGCTGTAC 4936 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | |||| || || ||| | || | ||||||| |||| || | | ||| Sbjct 4937 CCAGGCCTGCTCGTGGAGAAGCCGCGCCCAGGTGCCATCTTCGGAGAAACGATGGTGGAG 4996 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 || || ||||||||||||| ||| || || || | |||||||||||| | ||| Sbjct 4997 ATCGGAGCGCCGTTCTCCCTGAAGGGCCTGATGGGCAATGCCATCTGCTCCCCCGAGTAC 5056 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| | || | | ||| ||||||| | ||| |||| Sbjct 5057 TGGAAGCCCAGCACCTTCGGCGGGGACGTGGGCTTCGACATCGTCAACTCCGCCTCCCTG 5116 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | ||||||| |||| ||||| || | || |||| Sbjct 5117 CAGAAGCTCATCTGCAACAACGTCCAGGGCTGTCCCTTCACTGCCTTCC 5165 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| ||||| || ||| | |||||||| || || ||||| | | | | ||| | Sbjct 2994 CAGATGATTGATGGAGAAATGTACCCTCCGACGGTGAAGGACACACAGGCAGAGATGCTG 3053 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| ||| ||| ||||| | | | || | |||| | ||| ||||||| | Sbjct 3054 TACCCTCCCCACGTCCCCGAGCACCTGCAGTTTTCTGTGGGGCAGGAGGTGTTTGGTTTG 3113 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 || || || | ||| ||||||||| ||||||||||| || |||||| | || || ||| Sbjct 3114 GTCCCAGGCCTGATGATGTACGCCACGATCTGGCTGAGGGAACACAACCGTGTCTGTGAC 3173 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCA 214221 || |||||| | | ||| ||||||||| | || || ||||| ||||| Sbjct 3174 GTCCTGAAAAAGGTGCATCCGGAATGGGATGATGAGCAGCTCTTCCA 3220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722853675180000