Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11599 107 2e-18 seq5984 84.2 2e-11 seq14405 82.4 6e-11 >seq11599 Length=78777 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | | || |||||||| ||| ||||||||| ||| Sbjct 73311 TGATGGCTTTGCCTCCATGCCATGTCCTTTGCCAGTTTTATGTTGTAAATGGTGAATTGT 73252 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| | || || || ||||||||||| || || || || || || | Sbjct 73251 CTTGCCAACTCTATCAGCGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 73192 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 73191 GCTATTCACTGCTCACTTACATGATTGCCCATGTCAC 73155 >seq5984 Length=37620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 |||| || ||||| ||||| || || |||||||| ||||| || ||||| || ||||||| Sbjct 867 AAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACATTCAGAGATGTACA 926 Query 43992 GTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||| || || || ||||| || ||| Sbjct 927 GTCTTCTTATTGACACCTACATTAAGGAT 955 >seq14405 Length=70954 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || ||| Sbjct 63399 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 63340 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 63339 TACAGCTTGCTCATAGACACCTACATCAAAGAT 63307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397195029769375