Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq38988 104 7e-17 seq5984 93.3 1e-13 >seq38988 Length=71893 Score = 104 bits (114), Expect = 7e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| | ||||| ||||||||||| || ||| |||||||| || ||||| |||||| Sbjct 70435 GCTGTGGTGACTGTCCCAGCCTATTTCAACGATTCCCAGCGTCAGGCTACAAAGGATGCT 70376 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | |||||| || | ||||| || ||||| || || || ||||| || || || || Sbjct 70375 GGAACCATTGCAGGCCTCAATGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCATA 70316 Query 349730 GCATATGGGCTTGATAA 349746 || |||||||| || || Sbjct 70315 GCCTATGGGCTGGACAA 70299 >seq5984 Length=37620 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||||| Sbjct 3012 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCT 2953 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||| | || ||||| || || ||||| ||| |||| Sbjct 2952 TCTTCAGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 2893 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 2892 AAGCTACTA 2884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514208460136625