Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq14405 87.8 2e-12 seq34970 84.2 2e-11 >seq14405 Length=70954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| |||||||| ||||||||||| || || || |||||| || ||||| Sbjct 59628 GCCTTTGC-TGCAGTGGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCTATATTTTGGCT 59570 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||||| ||||| || |||| ||||||||| || || ||| | | || || Sbjct 59569 GAAGAAGAGGGGCCTAATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGATGA 59510 Query 60110 GG 60111 || Sbjct 59509 GG 59508 >seq34970 Length=16158 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 ||||||||||||| | ||||| ||||||||||||| ||| |||| |||||||||| || Sbjct 7866 ACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCA 7925 Query 79187 TGTACGGCGTCCCGGTCTC 79205 |||| || || || ||||| Sbjct 7926 TGTAAGGAGTGCCAGTCTC 7944 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || ||||||||||||||||||||||||||||| || || || ||| Sbjct 9751 AGCTGCTTCCTGCTGTGCATGAAGGATGACAGCATTGAGGGCATCTATGACACCCTGAAG 9692 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||| ||||||| | ||||| || || Sbjct 9691 CAGTGTGCCCTCATTTCCAAGTCTGCTGGGGGCATTGG 9654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548155402830000