Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq38369 102 9e-17 seq14405 95.1 1e-14 seq14829 86.0 7e-12 seq34970 82.4 8e-11 >seq38369 Length=20657 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || |||||| || |||||||| Sbjct 9201 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCCCCGTGCAGCCGAGTGCCAAACTGA 9142 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||||| || | ||||||||||||| ||||| || ||||||||||| || Sbjct 9141 CCAATGGGCTGCAGCAAGTTGAGGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTT 9086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| |||||||| || || || || || || || Sbjct 9201 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCCCCGTGCAGCCGAGTGCCAAACTGA 9142 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 ||| | |||| || | ||| ||||||||| ||||||||||| ||||||||||| Sbjct 9141 CCAATGGGCTGCAGCAAGTTGAGGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTT 9086 >seq14405 Length=70954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 59510 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATTAGGCCCCTCTTCTTC 59569 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| ||||||||||||||| || |||||||| Sbjct 59570 AGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCCACTGCAGCAAAGGCA 59629 Query 74892 AC 74893 || Sbjct 59630 AC 59631 >seq14829 Length=35996 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| || | || || || || Sbjct 1172 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGGAGCCTGGTGCCAAACTGA 1113 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || || | ||||| ||||||||||| ||||||||||||||| Sbjct 1112 CCAATAGGTTGCAGCAGATTGACATTGTTACTTCCCACAAAGTTCTGAGCCAAGTTGACA 1053 Query 117425 ATCGT 117429 || || Sbjct 1052 ATAGT 1048 >seq34970 Length=16158 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| ||||| | || | ||| |||| ||| || || |||| |||||| || || || Sbjct 7990 GGTGAAGGCCCAGCAGCTCTGGTATGCCATCATCGAGTCCCAGACGGAGACTGGCACTCC 7931 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949 |||||| ||||||||| || |||| ||||||||||||| ||||| | ||| ||| Sbjct 7930 TTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCAT 7871 Query 53950 CAAATCGAGCAAC 53962 ||| | |||||| Sbjct 7870 CAAGTGCAGCAAC 7858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546847484225000