Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq30931 168 8e-37 seq38369 87.8 2e-12 seq34970 86.0 7e-12 >seq30931 Length=27074 Score = 168 bits (186), Expect = 8e-37 Identities = 184/244 (75%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || || |||||| | || Sbjct 53 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 112 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 113 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 172 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 173 CAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 232 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 |||| ||||||||||| || || || || |||| || | ||||| | ||||||| Sbjct 233 ATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTCAGGGGTGGCTA---TTAAAGT 289 Query 27646 TTTT 27649 | || Sbjct 290 TGTT 293 >seq38369 Length=20657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| | ||| | |||||||||||||| || || ||||| ||||| || |||| Sbjct 9077 ACCATCATTAACTTGGCTCAGAACTTTGTGGGGAGCAACAACCTCAACTTGCTGCAGCCC 9136 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| ||| |||||||| |||| ||| | || |||||| Sbjct 9137 ATTGGTCAGTTTGGCACTCGGCTGCACGGGGGCAAGGACTCTGCCAGCCCTCGATACATC 9196 Query 32245 TTCACC 32250 |||||| Sbjct 9197 TTCACC 9202 >seq34970 Length=16158 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACTCC 80631 ||||| ||| | | || || || ||||||| | |||||||||||| || | |||| Sbjct 5911 GGAGAGCCCTCATAGGTGTCATAGGGGCCCTGCTCCTTGGCCAGCTCGCAGCTGGCCTCC 5970 Query 80632 ATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGG 80691 | |||| || || ||| |||||||| | || ||| | | |||| ||| Sbjct 5971 A---GGGCACTGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAGCTGGGCCTCGGGG 6027 Query 80692 TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCG 80751 ||||| | || | ||| | ||||| | || ||||||||||| ||||||||| | Sbjct 6028 CTCTCGAAGGGGAACCTCATGAGGATGAAGGCATCGGCCAGGCCCTGCACGCCGATGCCA 6087 Query 80752 ATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785 || |||||||||||| ||| || ||||| |||| Sbjct 6088 ATGGGGCGGTGGCGCCGGTTGGAGCGCTCAGCCT 6121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569926331590000