Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq11599 102 7e-17 seq37796 86.0 5e-12 >seq11599 Length=78777 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || ||||||||||| || | || |||||||| | ||| ||||| Sbjct 73149 AGCCCTGTGACATGGGCAATCATGTAAGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 73208 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | || | ||| || | ||||||||| | || || ||| || Sbjct 73209 ACTCCTAGTCCCATATCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTACA 73268 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||||||||| | | || || |||||||||| | |||| Sbjct 73269 ACATAAAACTGGCAAAGGACATGGCATGGAGGCAAAGCCAT 73309 >seq37796 Length=115109 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 3288 TTGTTGCTTTCTTTGAGTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATAC 3347 |||| || ||||| |||||||| ||||| ||||||||||| |||||||| | | || Sbjct 113482 TTGTGGCCTTCTTCGAGTTTGGCGGTGTGATGTGTGTGGAGAGCGTCAACCGGGAGATGT 113423 Query 3348 CCTCCCTCGTTGACAACATTGCCGCGTGGATGACAGA 3384 | |||| || ||||||||||| || |||||||| || Sbjct 113422 CTCCCCTTGTAGACAACATTGCTGCCTGGATGACTGA 113386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414204653885500