Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq30931 158 3e-33 seq36098 89.7 1e-12 >seq30931 Length=27074 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | ||||| Sbjct 264 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 205 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || |||||||| |||| |||||||||||| Sbjct 204 TCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 145 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||| ||| | ||||| || || ||||| ||| Sbjct 144 TGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACTTCCAGGGTGATGGTC 85 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 84 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53 >seq36098 Length=1627 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||| || ||||||||| ||||||||||| | || ||||| Sbjct 367 CCTTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGTTGGGCTCCACCTCT 308 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || ||||| || ||||| ||||| | |||||| || Sbjct 307 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158351868164375