Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq11599 96.9 3e-15 seq5375 91.5 1e-13 >seq11599 Length=78777 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || ||||| ||||||| || ||||| || || ||||| ||| Sbjct 76823 AAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 76881 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 76882 ACCCTGCTTATCCAGGAACTCACGCGATCCATTAGCATCCCAAATCTTCACACCTTTTGC 76941 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 76942 AGAGAGCTCTTTGGCATTTGTAGAACC 76968 >seq5375 Length=2475 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||||||||| || || | ||| | |||||| ||||||||| ||||| || ||| Sbjct 294 TTGAGCTCCCTGCTTAGCACAATGTTGATCCTGTCCTTCAGAGGTCGGTTCTTCTCAGGG 235 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| | ||||| |||| | |||||||| ||| Sbjct 234 ATGGAGAACCAGGTCTTCTTGCCCATGATCAGAGCATTCTGCTTGCCT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405896512608250