Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq14405 107 3e-18 seq5984 107 3e-18 seq34970 87.8 3e-12 >seq14405 Length=70954 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || ||||||||||| || | ||| || Sbjct 59510 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATTAGGCCCCTCTTCTTC 59569 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || || ||||| |||||||| || || || || || Sbjct 59570 AGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCCACTGCAGCAAAGGCA 59629 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 59630 ACCACTCTCTCACC 59643 >seq5984 Length=37620 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | ||| || Sbjct 3007 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 2948 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || || || ||||||||||| || ||||| ||||| || || || Sbjct 2947 AGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAGCT 2888 Query 46774 AC 46775 || Sbjct 2887 AC 2886 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| || ||||| | |||||||||||||| || ||||| || ||||| || |||||| Sbjct 4288 GACATGACACCCATCCTCTGGTATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4229 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||| || || |||||||| || || || ||||| Sbjct 4228 TCCAGAGAGATGTTTTCCATGAAGTCGAAAGGATT 4194 >seq34970 Length=16158 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || || || ||| | || || || || || || | Sbjct 2381 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGTTCAGCGATGTGGATGT 2440 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | || || ||||| ||||||||||||||||| || || ||||| || | ||||||| Sbjct 2441 TGAGGGATTGGCTTTGGTCGATGAAAGCTCCTCTGTCCGCAGCCATCTTCAGGATGGTCT 2500 Query 75564 TTTGAGGAATTTCCCA 75579 |||| | || ||||| Sbjct 2501 TTTGGGAGATCTCCCA 2516 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| || || || |||||||| || || || || || ||||||||||| || Sbjct 7844 ATCTCAGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 7903 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 || || |||||||| || || | | ||||| ||||| || |||| || ||||| || Sbjct 7904 TTGCAGGAGTCCTTGTAGAGCATGTAAGGAGTGCCAGTCTCCGTCTGGGACTCGATGATG 7963 Query 76448 GATTTCCAGA 76457 | | ||||| Sbjct 7964 GCATACCAGA 7973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712454283240000