Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq30931 109 1e-18 >seq30931 Length=27074 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || ||||||||||| || | | || Sbjct 274 CCTGAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 215 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||| || || ||||| |||||||| |||||||||||||| | | || || Sbjct 214 GCGCCCATCCTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATACC 155 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | | || ||| ||| ||||| Sbjct 154 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCAACTTC 98 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 97 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153024348150125