Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq37714 203 5e-47 seq26056 98.7 1e-15 >seq37714 Length=41178 Score = 203 bits (224), Expect = 5e-47 Identities = 223/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||| ||||||| | |||| || ||| | | ||| Sbjct 5165 GGAAGGCAGTGAAGGGACAGCCCTGGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCGG 5106 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||| |||| |||||||| ||||||||||||||||||||||||||| | |||| Sbjct 5105 AGTTGACGATGTCGAAGCCCACGTCCCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 5046 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| ||||| || ||||||||||| || || | ||| | || Sbjct 5045 AGCAGATGGCATTGCCCATCAGGCCCTTCAGGGAGAACGGCGCTCCGATCTCCACCATCG 4986 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || ||||||||||| || || ||||| ||||| | | || | ||||||||||| Sbjct 4985 TTTCTCCGAAGATGGCACCTGGGCGCGGCTTCTCCACGAGCAGGCCTGGGTACAGCTCCA 4926 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| |||||||||||| || || || || || ||||| |||||||||| Sbjct 4925 TGGCGTCGATGTCTCCGTAAAGCTCCTCCAGCTCAGCTGCCATCTCTTTTTCTCCTG 4869 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || || ||||| || ||||| ||| |||||| ||||| | | |||||| Sbjct 3235 ATGAGTCTAGCAGTTTGGAAGAGCTGCTCATCATCCCATTCCGGATGCACCTTTTTCAGG 3176 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || || | |||||||||||| |||||||| |||||||||||||| || || || Sbjct 3175 ACGTCACAGACACGGTTGTGTTCCCTCAGCCAGATCGTGGCGTACATCATCAGGCCTGGG 3116 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||||| || | |||||| Sbjct 3115 ACCAAACCAAACACCTCCTGCCCCACAGAAAACTGCAGGTGCTCGGGGACGTGGGGAGGG 3056 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| || |||| || || |||||||| || ||||||||| Sbjct 3055 TACAGCATCTCTGCCTGTGTGTCCTTCACCGTCGGAGGGTACATTTCTCCATCAATCATC 2996 Query 9484 TG 9485 || Sbjct 2995 TG 2994 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || ||||| || || | | || || || || | |||| || Sbjct 1294 ACCTTTAACACCCATCGGTGTTGGGCAGTCAAGCGCTACTGGTGGGAGGCTTCTTGTATA 1235 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| ||||||||| ||||||||||||| ||| |||||| |||||| | || Sbjct 1234 ATAGGAAAGATTGGAGTAAGCTTCCCAGCTCTTGTAACTGTAGTCACTGTTGTAAGTTGG 1175 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 |||||||||||||| | ||||| |||| Sbjct 1174 TGGGCTGTCAATCAAGTGTGATCTTGCTGA 1145 >seq26056 Length=16545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || |||| || | | |||||| ||| |||||| || || || || Sbjct 7787 CATCTGGCACATGGAATGCCACATAGGGACACTTCTTCACGTTGAGGCACACAAGCTTCT 7846 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | | ||| |||| || ||| | || || |||| || || || ||||| |||| Sbjct 7847 GGAGCGATGCTGTCTTAACAATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCC 7906 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| || | | || || || ||||| || ||||| || | Sbjct 7907 AGTACTCTGGGGAGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAA 7966 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || ||| | ||||| |||| || |||| || || || | Sbjct 7967 TCTCCACCATGCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCCAGCAGCAAGCCTG 8026 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || | ||||| ||| || | |||||| || || Sbjct 8027 GATAAAACTCCAGAGCATCAATGTCTCCATACAG 8060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716394028280000