Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2518 109 4e-19 seq2003 87.8 1e-12 >seq2518 Length=1031990 Score = 109 bits (120), Expect = 4e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||||| ||| || ||||||||||| Sbjct 997459 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGG 997400 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| ||||||||| ||| Sbjct 997399 AATGGAGAACCAGGTTTTTTTACCCATTATCAAGGCGTTCTGTTTACCTG 997350 >seq2003 Length=1208679 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || ||||| | ||| || | Sbjct 414426 CTTTGTATTCTGCTCCNAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 414485 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | || |||| |||||||||| Sbjct 414486 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGNGACCCATGAGCATCCCAAA 414545 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-AC 102211 | | ||| || ||| || ||||||||| | ||||| || || | ||| |||| || Sbjct 414546 TCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAGAC 414603 Query 102212 AGT 102214 ||| Sbjct 414604 AGT 414606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361236970315232