Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2003 104 2e-17 >seq2003 Length=1208679 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| |||||| |||| | | |||||||| ||||| || |||||||| ||| Sbjct 410887 GTGACATGGGCAATCATATAAGTAAGCAATGAATAGCTGGCAATATTGAAAGGCACTCCT 410946 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | ||| || || | | |||||| ||||| Sbjct 410947 AGTCCCATATCTCCAGACCTCTGATAGAGCTGGCATGACAATTCACCATCAAGAACATAG 411006 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 411007 AACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 411041 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/148 (73%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||| || |||||||| ||||| |||||||| ||||| | || || || ||| Sbjct 414431 TATTCTGCTCCNAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 414490 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || || |||| ||||||||||| Sbjct 414491 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGNGACCCATGAGCATCCCAAAT 414546 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 414547 CTTCACACCTTTTGCAGAGAGCTCTTTG 414574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346770340178240