Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1559 107 4e-18 >seq1559 Length=1331468 Score = 107 bits (118), Expect = 4e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| ||||||||| | ||||| ||||| ||||| |||||||||| |||||||| Sbjct 919848 GCTTTTTTCGGAGCTCAGATGAATTCATTTATTCATGTCATTATGTACATGTATTATGGA 919789 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| |||| || ||| || || ||||||||||| || | || ||| Sbjct 919788 TTAGCTGCCTGTGGCCCTAAATTTCAAAAATACCTGTGGTGGAAACGATACTTGACCATA 919729 Query 52177 ATGCAGTTGGTA 52188 ||||||||||| Sbjct 919728 TTGCAGTTGGTA 919717 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 919222 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 919163 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || || ||||| || ||| || ||| ||||| |||| | ||||| || |||||||| Sbjct 919162 CCCTAAGTGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCCTGTTTGG 919103 Query 52305 TAACTTCTATTTTAGAACATACAAGA 52330 ||||||||| | | | ||||| |||| Sbjct 919102 TAACTTCTACTATCGGACATATAAGA 919077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923159502849280