Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq3 230 2e-55 >seq3 Length=4188689 Score = 230 bits (254), Expect = 2e-55 Identities = 304/423 (72%), Gaps = 5/423 (1%) Strand=Plus/Minus Query 125093 CCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCA 125152 ||||| || ||| |||||||||||||| || || ||||||||| |||| ||||||| Sbjct 2693112 CCCGTCCCC-GCTCACCCATCCGCCGTGAGCCTCCAGCCACTCGCCGCGCTCCTCGGCCA 2693054 Query 125153 GGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACA 125212 |||| || |||||||| ||||||| || || || || || ||||| |||| || Sbjct 2693053 GGTATGCAGCCAGCGCGGCGGCCAGGCAGCGCGGGCCGTCGGTGCAGCCCCGCTCGTCCA 2692994 Query 125213 GCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGC 125272 |||| | ||||||| |||| ||| || | | ||||||| || |||||||||| || Sbjct 2692993 GCGCGGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGGATCCGGCCCCAGTTGAGGC 2692934 Query 125273 CGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGC 125332 ||| | | | || | | |||| | | |||| || | |||| |||||| Sbjct 2692933 CGCCGTCAGCCTCCAGCTGCACCGCCACCCGCTCCAGCAGCGCCGTCGCTTCCTGCGGCT 2692874 Query 125333 CGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGG 125392 || | | ||| | ||||||||||||||| |||||| || ||| ||||||||||||||| Sbjct 2692873 CGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGACCCGCTCCTGCCGCTCCAGCTCGG 2692814 Query 125393 CCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGC--GGCCCTTCCTTGCCGCA 125450 ||||||| ||||| || || || || ||| || || || ||||| Sbjct 2692813 CCGCCGCCCGCCGCAGCGTAGCCGCCGTGGGGCTGGGGGGCAGCGCGCTGCC--GCCGCT 2692756 Query 125451 GCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCAT 125510 || |||||||||||| ||||||||||||| |||||| || |||||||| ||| | | ||| Sbjct 2692755 GCGGTGCTGGAAGTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGCGAGCCCGGCAT 2692696 Query 125511 GGC 125513 ||| Sbjct 2692695 GGC 2692693 Score = 215 bits (238), Expect = 5e-51 Identities = 301/423 (71%), Gaps = 5/423 (1%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| ||||||||||||| |||||||||||| Sbjct 2692693 GCCATGCCGGGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAC 2692752 Query 157143 TGCTGCGGCAAGGAAGGGCC--GCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNN 157200 || ||||| || || || ||| || || || |||||||| ||||||||| || Sbjct 2692753 CGCAGCGGC--GGCAGCGCGCTGCCCCCCAGCCCCACGGCGGCTACGCTGCGGCGGGCGG 2692810 Query 157201 NNNNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCG 157260 ||||||| ||| || |||||| ||||||||||||||| | ||| | | Sbjct 2692811 CGGCCGAGCTGGAGCGGCAGGAGCGGGTCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGG 2692870 Query 157261 GCGGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAA 157320 || |||||| |||| | || |||| | | |||| | | || | | | Sbjct 2692871 CCGAGCCGCAGGAAGCGACGGCGCTGCTGGAGCGGGTGGCGGTGCAGCTGGAGGCTGACG 2692930 Query 157321 GCGGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGG 157380 ||||| |||||||||| || ||||||| | | || ||| |||| ||||||| | | Sbjct 2692931 GCGGCCTCAACTGGGGCCGGATCCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCCG 2692990 Query 157381 CGCTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGT 157440 ||||| |||| ||||| || || || || || ||||||| |||||||| || | Sbjct 2692991 CGCTGGACGAGCGGGGCTGCACCGACGGCCCGCGCTGCCTGGCCGCCGCGCTGGCTGCAT 2693050 Query 157441 ACCTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCAC 157500 |||||||||| |||| ||||||||| || || |||||||||||||| ||| || || Sbjct 2693051 ACCTGGCCGAGGAGCGCGGCGAGTGGCTGGAGGCTCACGGCGGATGGGTGAGC-GGGGAC 2693109 Query 157501 GGG 157503 ||| Sbjct 2693110 GGG 2693112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509163428966400