Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq692 405 4e-108 seq1747 84.2 2e-11 >seq692 Length=1742483 Score = 405 bits (448), Expect = 4e-108 Identities = 696/1002 (69%), Gaps = 14/1002 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGC-TTCAAGGCCCAAAGGAAGTTCATACAGTT 107686 ||||| ||||| |||| ||||| ||||| ||||||| || ||||||| |||| Sbjct 1247315 TACCTGAACATGACCAAGGACTGC-AGCGCCTTCAAGGAGAGCCGGCGGTTCATAGAGTT 1247373 Query 107687 CCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 ||| ||||| | |||||| ||| |||||||| |||||||| ||||| ||||| | || Sbjct 1247374 CCCGCTGAGCCAGGAAGAGGAAGAGTTCCCCATCGCCTACTCCATGGTCATCCATAACAA 1247433 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 ||||| | || || ||||| ||||| || | |||||||| ||||| | ||||| || Sbjct 1247434 AATTGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTATGCCCCCCAGAATGTCTACTGCGT 1247493 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 |||| | ||| |||||||||| | ||| | || || || |||||| | |||| Sbjct 1247494 CCACATTGATAACAAGTCCCCAGCCGCCTTCCAGGAAGCCGTGCGGGCCATCGTAGCCTG 1247553 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||||||||| ||||| |||| || | ||| ||||| ||||||||||||||| | Sbjct 1247554 CTTCCCCAACGTCTTTGTGGCGAGCCACCTGGAAAACGTGGTCTATGCCTCCTGGTCCCG 1247613 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTA 107986 |||| || ||||| ||||| ||| | ||| || | |||| | | || ||| | || Sbjct 1247614 GCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAATCCNATTCCCTGGCACTA 1247673 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | | || || || ||||| || || |||||||| ||||| || |||||||| |||| || Sbjct 1247674 CGTCCTCAACACCTGCGGCACTGATTTCCCCATCAAGACGAACGCCGAGATTGTCCGTGC 1247733 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 ||| ||| || || |||| |||||| |||||||| ||| || || | ||| | Sbjct 1247734 CCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAGTCGGAGAAGCCGTCGGCACTCAAGCA 1247793 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACA---CACTGTACC---CTACCAGCAA 108160 | |||||| |||||| | | ||||| ||| || || | | || | ||| ||| Sbjct 1247794 GCAGCGCTGGCAATACCACCACAAGGTG-CAG-CAGGTCA-TCTTCCGGACAGCCACCAA 1247850 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 || | ||||||| | || | ||||||||||| || || || || | ||| Sbjct 1247851 GAAACTGCCGCCTCCCC---ACAACTACCCCATGTTCACTGGTAACGCATACGTCGTGAT 1247907 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280 | | || ||||| || || || |||| || |||| | | || | | || || Sbjct 1247908 CACCCGTGCCTTCGTGCAGCACATCTTCGAGGACCCCGCAGCGCAGCAGTTCCTCGAGTG 1247967 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG 108340 || ||| |||||||| ||||| ||||| ||| |||||||||| || | |||| || | Sbjct 1247968 GGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACGCTCAACCGTGTGCCTGG 1248027 Query 108341 GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGC 108400 |||| ||| | | || || ||||| || |||| ||||||| ||| | | Sbjct 1248028 TGTGCCCGGCGCCATGCCCCCGAACGACAAGTTCCAGCTCTCGGACATGAACGCCCTGCC 1248087 Query 108401 CAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACC 108460 | | || ||||||||| |||||| ||||| || ||||| ||| ||||| || |||| Sbjct 1248088 CCGTCTGGTCAAGTGGGAGTACCTGGAGGGGGACACCAGCAAGGGCGCGCCCTACCCACC 1248147 Query 108461 CTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGAT 108520 |||| | || |||| | | ||| |||| || ||||| | || ||| || |||||| Sbjct 1248148 CTGCACCGGCCAGCATCAGCGCGCCGTCTGTATCTACGGCGTGGGCGACGTGCCCTGGAT 1248207 Query 108521 TCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCT 108580 |||||| | || ||||||||||| |||||||| ||||| |||||| || || | Sbjct 1248208 GCTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCTTGGTGGACGACGCCGCTAT 1248267 Query 108581 GCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || || | || ||| || | || || | |||| |||| || Sbjct 1248268 CCAATGTCTGGAGGAGCACTTGCGCCACAGGGCCCTCTACGG 1248309 >seq1747 Length=1273762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 226/341 (66%), Gaps = 10/341 (3%) Strand=Plus/Plus Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 |||||| | |||||||||||||||| ||| | || || || |||| | |||| Sbjct 638756 GAAGAGGCCGCCTTCCCCATTGCCTACGTTATGACCCTGCACAAGGAGTTTGAGACCTTT 638815 Query 107760 GAACGGCTGCTGCGAGCCGTGT--ATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 || ||||| | | || |||| |||||| |||||| | ||||| |||||||||||| Sbjct 638816 GAGCGGCTCTTCAGGGCAGTGTACATGCCC--CAGAACGTCTACTGCATCCACGTGGATG 638873 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 ||| | || | |||| | ||| || | | | | |||||||||||| | Sbjct 638874 CCAAGGCACCGGCCCGTTTCCATCGGGCAGTGCGGCGCCTGCTGGGCTGCTTCCCCAACG 638933 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 |||| | ||| | || | |||||| |||| | | ||| | ||| |||| Sbjct 638934 CCTTCCTCGCCTCCCGGANGGAGCGGGTGGTCTATGGCGGCATCTCCCGCCTGCGGGCTG 638993 Query 107938 ACCTGAACTGTATGGAAGACTTGCT--CCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 |||| |||| ||| |||| |||| || | | ||||| ||| ||| | || || Sbjct 638994 ACCTCCACTGCATGAGAGACCTGCTGGCCTCGG--CCGTGCCCTGGCGCTACCTGCTCAA 639051 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGA 108036 || ||||| ||||||||| | |||||||| |||||| Sbjct 639052 CACCTGCGGCCAGGACTTCCCCTTGAAGACCAA--CCGAGA 639090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348255081691968