Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq337 147 3e-30 seq425 116 5e-21 >seq337 Length=1925606 Score = 147 bits (162), Expect = 3e-30 Identities = 221/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | |||| Sbjct 1633963 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 1633904 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| || || | ||| || |||||||| || |||||||| | |||| Sbjct 1633903 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1633844 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || ||||||| ||||| || || || || || || | ||| | || Sbjct 1633843 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGNGCTCCAATCTCCACCATTG 1633784 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | |||||||||||||| || || |||| ||| || | || || | ||||| |||| Sbjct 1633783 TTTCACCGAAGATGGCACCTGGTCGTGGCTGTTCTACAAGGAGGCCTGGGTACAGNTCCA 1633724 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-- 8976 ||| || || ||||| ||||| | | ||| || || ||||| ||||| ||||| Sbjct 1633723 TAGCATCAATNTCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCCCCTGTAA 1633664 Query 8977 TTTATTAATaaaaa 8990 || |||| |||||| Sbjct 1633663 TTGATTAGTAAAAA 1633650 Score = 127 bits (140), Expect = 3e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| ||||| || || ||||||| Sbjct 1631813 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 1631754 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || |||| ||||||||| || ||||| || |||| ||||||||| | || || Sbjct 1631753 ATGTCACAGACTCGGTTGTGTTCNCTCAGCCATATTGTAGAGTACATCATCAAGCCTGGG 1631694 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || | | ||||| Sbjct 1631693 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 1631634 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 1631633 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 1631574 Query 9862 TG 9863 || Sbjct 1631573 TG 1631572 >seq425 Length=1857977 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||| ||||| |||||||||||||| | |||| Sbjct 1035465 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGG 1035406 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 1035405 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 1035346 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || ||||| ||||||| |||| || || | || || || | || ||||||| Sbjct 1035345 TTTCCCCAAAGATTCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCA 1035286 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || || |||||||| || || Sbjct 1035285 GCGCGTCAATGTCTCCATAGAG 1035264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708496175598080