Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq416 138 2e-28 >seq416 Length=88659 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||| ||||| || |||||||||||||| || Sbjct 42151 CGCCAAGCGCCACCGCAAAGTGCTGCGGGATAATATCCAGGGCATCACCAAGCCAGCCAT 42092 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| ||||| || || ||||| |||| || | ||||||| |||| Sbjct 42091 TCGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTATGAGGAGAC 42032 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||| | ||| ||| |||| || ||| || ||| || || Sbjct 42031 GCGCGGCGTGTTGAAAGTCTTCTTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGA 41972 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | ||||| | |||||||| |||| || || || Sbjct 41971 GCACGCCAAGAGAAAGACGGTGACTGCGATGGACGTGGTCTATGCTCTGAAGCGCCAGGG 41912 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 41911 ACGCACCCTCTACGGCTTTGG 41891 Score = 125 bits (138), Expect = 1e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || ||||| || ||||| || ||||||||||| |||||| Sbjct 29959 GCCAAGCGCCACCGCAAAGTGCTGCGAGACAATATCCAGGGCATCACCAAGCCGGCTATC 30018 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| ||||| || || |||||| |||| || | |||| || |||| Sbjct 30019 CGCCGCCTAGCTCGGCGTGGCGGCGTGAAGCGTATCTCGGGGCTCATCTACGAGGAGACG 30078 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||| | ||| ||| |||| || || || ||| || ||| Sbjct 30079 CGCGGCGTGTTGAAAGTCTTCTTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 30138 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| || | ||||| || || | ||||| | |||||||| Sbjct 30139 CACGCCAAGAGAAAGACGGTGACTGCGATGGACGTGGTCTATGC 30182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072244959776