Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq337 149 9e-31 seq425 109 8e-19 >seq337 Length=1925606 Score = 149 bits (164), Expect = 9e-31 Identities = 210/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || ||| | Sbjct 1633963 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 1633904 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 1633903 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1633844 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || ||||||| ||||||| || || || || || | ||| | || Sbjct 1633843 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGNGCTCCAATCTCCACCATTG 1633784 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || | ||| || | || ||| | ||| || || | Sbjct 1633783 TTTCACCGAAGATGGCACCTGGTCGTGGCTGTTCTACAAGGAGGCCTGGGTACAGNTCCA 1633724 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | || ||||| || ||||||| || || || || || || || ||| Sbjct 1633723 TAGCATCAATNTCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCCCCT 1633668 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || ||||| || ||||| || Sbjct 1631813 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 1631754 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||| | ||||||||| ||||||||||| || | ||||||||| || || || Sbjct 1631753 ATGTCACAGACTCGGTTGTGTTCNCTCAGCCATATTGTAGAGTACATCATCAAGCCTGGG 1631694 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 1631693 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 1631634 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 1631633 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 1631574 Query 9967 TG 9968 || Sbjct 1631573 TG 1631572 >seq425 Length=1857977 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| ||||| ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 1035439 CCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 1035380 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || ||||| | ||| | Sbjct 1035379 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAGATTCCGTTGGGTTGG 1035320 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | |||| || | || || | ||| |||||||| || Sbjct 1035319 GGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGCGCGTCAATGTCTCCATAGAGCTCT 1035260 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 | || || || ||| |||| | ||| ||| || Sbjct 1035259 TGCAGTTCTGCCGCTTTCTCTTCCTCTCCTGCA 1035227 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 1034133 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 1034076 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| |||||| | ||||| ||||| || | || || | Sbjct 1034075 CGAAGGAGTCGGGCATCAGCCCGTGCCAGTGATAGAGCTGGTTGAATTCCACTGCGATGC 1034016 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | || ||||||| || || |||||||| | ||| |||||||| | || | || Sbjct 1034015 GATTTCGGTACTGGAACTGTGTCCCGAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGT 1033956 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| ||||||||||| | | || || || |||||||| ||||| Sbjct 1033955 AGTACCCGCTGAGGTGCTGGACATAGTCTTCAATGATGATCTTAATGGTCTCCCC 1033901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723698761388800