Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq37 132 4e-25 seq75 105 5e-17 seq1558 91.5 1e-12 >seq37 Length=2074313 Score = 132 bits (146), Expect = 4e-25 Identities = 899/1439 (62%), Gaps = 24/1439 (2%) Strand=Plus/Minus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | ||||| || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 955981 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 955922 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || ||||| || | | ||| | ||||| || || || | Sbjct 955921 CTCCACGGGGCGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 955862 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || | | ||||||||| | | |||| | || | || || ||||||| Sbjct 955861 TCGTCATAGCCCTCTCACCCTCGTATACCTGGACAAGGACGCTGCTCTGGTTGTCTGAAT 955802 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 955801 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCT 955743 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || | || ||||| |||||||| | || | Sbjct 955742 GTCATCACTCCACCAGCTGTCTCAATGCCCAAGGACAGAGGGGTGACATCCAACAGCAGC 955683 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 955682 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCG 955623 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 955622 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 955563 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 || || | | | ||| |||||||| | || || || || | ||||| || || Sbjct 955562 TGTAGCAGCTTTTGGATCTTGGGAATACGGGTAGAGCCACCCACCAGCACAATCTCTTGG 955503 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT 517795 | ||| || || || || | ||| | | | || || || || || || | Sbjct 955502 ATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCCA 955443 Query 517796 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATAA 517852 | || | |||| | || || || || || | |||| ||| || || || Sbjct 955442 CGGAAGAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATGGAGGTG----TAGAA 955387 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 ||||| || ||||| | || |||| ||||| ||| ||| || ||||| || | Sbjct 955386 GTCAATACCCTCGAAGAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGGT 955327 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 517971 || || || | ||||| ||||| | || | | | ||| ||| ||| | Sbjct 955326 GCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACCGCTC--GCTTGTTGCCAGCA 955269 Query 517972 ATCTGTT--TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTAT 518027 || | || | || | |||||| ||||| ||| | ||| | || | ||| || | Sbjct 955268 ATGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAA--ATGGTTCACCATACGGTTGT 955211 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 |||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 955210 CAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCAT 955151 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | |||| | | | | ||||| || || || |||| ||||| || || |||| Sbjct 955150 CCTCAATGGTAAGGATGGACACATCGAAAGTACCCCCTCCCAAGTCAAAGATGAGCACAT 955091 Query 518148 TCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || | || || | || || || | ||||| || | |||||| || || | Sbjct 955090 TCTTCTCACCAGCTCGAGTACCCTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGG 955031 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| ||||| | || |||||||| |||| || | || |||||||| ||||| | Sbjct 955030 GCTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCT 954971 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTAC 518321 | | || || ||||| || || ||||| || ||||| ||||||| |||| | Sbjct 954970 GGCGCTGGGAGTCGTTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGCACTTTGCGCC 954911 Query 518322 CAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 518381 | | ||| || || | | ||||| || ||| | ||| || || | |||| Sbjct 954910 CCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTCTG 954851 Query 518382 GGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 518441 || | | ||| || | || |||| | | || || | ||| Sbjct 954850 GGAAGAAAGTCTTCATCTCCCCCTTGTACTCCACTTGTACCTTGGGCTTGCCGCTGTCAT 954791 Query 518442 TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 518501 | | || || ||||||| |||||||| || || || | |||||| | | | | Sbjct 954790 TCACCACACGGAAGGGCCAGTGCTTCATATCGGACTGCACCGTGGGGTCATCATACTTGC 954731 Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 || || | || || |||||||| || || ||||| || || || || | || | | Sbjct 954730 GGCCGATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCT 954671 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621 |||||||||| || || || | ||||| || || || | ||||| || || |||| Sbjct 954670 TGGCTGCATCACCGATGAGGCGCTCTGTATCAGTGAAGGCCACATAGCTGGGTGTGGTGC 954611 Query 518622 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | || ||||| ||||| ||||| || || ||||| |||| || | ||||| || ||| Sbjct 954610 GGTTCCCTTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAA 954552 >seq75 Length=213217 Score = 105 bits (116), Expect = 5e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 77335 TGTTGTAGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 77276 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 77275 TCATTATGGTGCACCAAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 77216 Query 367113 TGATGG 367118 |||||| Sbjct 77215 TGATGG 77210 >seq1558 Length=3585338 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | ||||||||||| || || ||| |||| | || || ||||| || |||| Sbjct 3294822 CAAACACTGTATTGGTTGGNTTCATCGCAACTTGGTTCTTTGCAGCATCACCGATCAACC 3294881 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | || || |||||| || || ||||| ||||| || |||| Sbjct 3294882 TCTCGGTGTCTGTGAAGGCCACGTAGCTTGGAGTGGTCCGGTTACCCTGATCGTTGGCAA 3294941 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || |||| || ||||||| ||||| | || || || | ||||| Sbjct 3294942 TGATTTCCACCTTCCCATGCTGGAATACACCAACACAGGAGTAGGTGGTGCCAAGATCAA 3295001 Query 518703 TACCAATAGC 518712 | |||| ||| Sbjct 3295002 TTCCAACAGC 3295011 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| |||||| || || ||||||||||| | |||||| || |||||||| Sbjct 3292277 TTATCCACAGCAGACACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATC 3292336 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || ||||| ||||||| ||||| || || | ||| | ||||| || Sbjct 3292337 TGAGGTACACCTCTGGGAGCAGGGGGGATACCAGTCAGCTCAAACTTGCCCAGCAAGTTG 3292396 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTC 517398 || |||||||| | ||||| ||||| Sbjct 3292397 TTGTCTTTAGTCATGGCACGTTCTCCCTC 3292425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780662017513792