Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq37 298 7e-76 seq1558 190 3e-43 >seq37 Length=2074313 Score = 298 bits (330), Expect = 7e-76 Identities = 1041/1602 (65%), Gaps = 42/1602 (3%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| || || | Sbjct 956100 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 956042 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||||||| | ||| || Sbjct 956041 TAAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 955982 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | ||||| ||||||| |||||||| ||||| | || || | || | || || || Sbjct 955981 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGG- 955923 Query 6747 TACCCCTCGGTGCG--GCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 || || ||| ||| | || || ||||||| ||||| | || || || |||| || Sbjct 955922 -ACTCCACGGGGCGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTC 955864 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTT 6863 | ||| | | | ||||| || || || | | || || | | || || ||| Sbjct 955863 CTTCGTCATAGCCCTCTCACCCTCGTATACCTGGACAAGGAC-GCTGCTCTGGTTGTCTG 955805 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||| | || || || | ||||| || || || | | || | | Sbjct 955804 AATAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAG 955745 Query 6924 GGGTCATAATACCACCCATAGTTTCGA-GTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 ||||| | ||||| || || | | ||||| |||||||| || || ||||| || Sbjct 955744 CTGTCATCACTCCACCAGCTGTCTCAATGCCCAAG-GACAGAGGGGTGACATCCAACAGC 955686 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | ||| || || ||| || | || ||| | | ||| || ||||| || | || Sbjct 955685 AGCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCA 955626 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| || || |||||||||||||| || | || || || ||||| || || || | Sbjct 955625 CCGTAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAG 955566 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 ||| || || | ||| || || || || || || || ||||| |||| || || || Sbjct 955565 TCCTGTAGCAGCTTTTGGATCTTGGGAATACGGGTAGAGCCACCCACCAGCACAATCTCT 955506 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | | | || || | ||| | || || || | || || || || |||| Sbjct 955505 TGGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTG 955446 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 |||||| | || | || |||||||| || |||||||||||||| || ||||| Sbjct 955445 CCACGGAAGAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATGGAGGTGTAGAAG 955386 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AAC 7339 |||| || ||| | | || ||||| |||||| | | ||||| | ||||| | Sbjct 955385 TCAATACCCTCGAAGAGGGAGTCAATCTCAATGCTAGCTTGTG---TGGAAGAGCTGAGG 955329 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| | |||||| || || || | || | | || ||| ||| || | | Sbjct 955328 GTGCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCA 955269 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||| || ||||| || || ||||| || || | | | || Sbjct 955268 ATGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATACGGTTGTCA 955209 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 955208 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCATCC 955149 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || ||||| || ||||| || |||| |||||| ||||| || ||| Sbjct 955148 TCAATGGTAAGGATGGACACATCGAAAGTACCCCCTCCCAAGTCAAAGATGAGCACATTC 955089 Query 7580 GTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | || ||||| || | || || || ||||| || || || || Sbjct 955088 TTCTCACCAGCTCGAGTACCCTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGC 955029 Query 7634 TCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||||| |||||||| | ||| || ||||||| || || | |||||||| || || || Sbjct 955028 TCATTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 954970 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || ||||| ||||| || || || || | ||| || | | ||||| || Sbjct 954969 GCGCTGGGAGTCGTTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGCACTTTGCGCCC 954910 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || || || || ||||| ||||| || ||||| || ||||| || | Sbjct 954909 CAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTCTGG 954850 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG-CA 7870 | | | || ||| | || || || | || |||| | | |||| || |||| | || Sbjct 954849 -GAAGAAAGTCTTCATCTCCCCCTTGTACTCCACTTGTACCTTGGGCTTG-CCGCTGTCA 954792 Query 7871 CCGGGGATAACCTTAT---ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAA 7927 | ||| | | | ||| | ||||||||| || ||| |||| | Sbjct 954791 T------TCACCACACGGAAGGGCCAGTGCTTCATATCGGACTGCACCGTGGGGTCATCA 954738 Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 |||| | ||||| |||||||| |||||||| | ||||| | |||||||| || Sbjct 954737 TACTTGCGGCCGATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACC 954678 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| || || || ||| | || || || || || | | Sbjct 954677 TGGTTCTTGGCTGCATCACCGATGAGGCGCTCTGTAT---CAGTGAAGGCCACATA-GCT 954622 Query 8048 GGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 ||| || || || ||||||||||| || ||||| || || || | | | || |||| Sbjct 954621 GGGTGTGGTGCGGTTCCCTTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGAC 954562 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || ||||| || || | || || |||||||| Sbjct 954561 ACCCACGCAAGAGTACGTGGTGCCCAGGTCGATGCCGATTGC 954520 >seq1558 Length=3585338 Score = 190 bits (210), Expect = 3e-43 Identities = 366/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||| || || || | || ||||| ||||| || || || Sbjct 3293258 GCACCATAAGCCACAGCCTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 3293317 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| |||| || || Sbjct 3293318 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGAACCACCAACCAGCACAATA 3293377 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || | ||| | || || || | || || || || |||| Sbjct 3293378 TCATGGATCTGGGACTTGTCAAGCTTGGCATCCCGCAGAGCCTTCTCCACTGGATCCAGG 3293437 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| | ||| || ||||| || || | ||| |||||||| ||| Sbjct 3293438 GTGCCGCGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTGATGGATGTGTAG 3293497 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| ||| || || | || ||||||||||| | | || | | ||||| | Sbjct 3293498 AAGTCAATGCCCTCATAGAGAGAGTCAATTTCAATACTGGCCTGCGTGCTAGAAGACAGA 3293557 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| ||||| || || | ||||||| || ||| ||| | Sbjct 3293558 GTACGCTTGGCACGCTCNCACGCGGTGCGGAGGCGACGAACTGCGCGCTTGTTTTCACTG 3293617 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| ||||| || || ||||| || |||||| | | | || Sbjct 3293618 ATGTCCTTCTTGTGTTTGCGCTTGAACTCGGCAATGAAGTGGTTCACCATGCGGTTGTCA 3293677 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| ||||||||||| || || || || || | ||| || || |||||||| || Sbjct 3293678 AAGTCTTCTCCACCCAAGTGGGTGTCACCTGCAGTGGATTTCACCTCGAAGATACCATCT 3293737 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | || |||||||| || ||||| || |||||||| ||||| || ||| Sbjct 3293738 TCAATAGTCAGAATGGACACATCAAAAGTGCCACCTCCGAGGTCAAAGATGAGAACATTC 3293797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635107140634880