Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq37 132 4e-25 seq1558 120 2e-21 >seq37 Length=2074313 Score = 132 bits (146), Expect = 4e-25 Identities = 359/543 (66%), Gaps = 5/543 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || ||| || ||||| | || |||| ||| Sbjct 954520 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 954579 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| ||||| ||| | || || || ||||| | ||||| Sbjct 954580 GTGGAGATCATTGCCAATGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 954639 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | ||||||||||| || | || | || || |||||||| Sbjct 954640 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 954699 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || ||||||||||| ||| | || || | | | | |||| | || || ||| | Sbjct 954700 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCC 954759 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| ||||| |||| | || |||| || || || | | ||| Sbjct 954760 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGACAGCGGCAAGCCCAAGGTACAAGTG 954819 Query 550291 TACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || | ||| || | || | ||| ||||| | || |||||||| ||| Sbjct 954820 GAGTACAAGGGGGAGATG-AAGACTTTCTTC-CCAGAGGAGATCAGCTCTATGGTCCTAA 954877 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 || ||||| | | || || | | | || | |||| | |||| || || | Sbjct 954878 CCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCCGTCATTA 954937 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || || ||||| || || || || || ||||||||||| || Sbjct 954938 CAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCATCA 954997 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| |||||||| | |||||||||||||| || || || ||||| | || ||||| | Sbjct 954998 CTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGG-C 955056 Query 550530 TTG 550532 ||| Sbjct 955057 TTG 955059 >seq1558 Length=3585338 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| ||||| ||||| || ||||| || ||||| ||||| ||||||| Sbjct 3294058 ATGCTGTAGTGACTGTCCCAGCCTATTTCAACGACTCTCAGCGTCAGGCTACAAAAGATG 3293999 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || ||||||||||| || || ||||||||| Sbjct 3293998 CTGGAACCATTGCAGGGCTCAATGTCCTGCGAATTATCAATGAGCCAACAGCTGCTGCAA 3293939 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 3293938 TAGCCTATGGTCTGGACAA 3293920 Score = 87.8 bits (96), Expect = 1e-11 Identities = 223/340 (66%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 551899 TTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAA 551958 ||||||| || | || || || || | ||||| || |||| || ||| | || || Sbjct 3293597 TTCGTCGCCTCCGCACCGCGTGNGAGCGTGCCAAGCGTACTCTGTCTTCTAGCACGCAGG 3293538 Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 ||| ||||||| | || || | | |||||| ||||| | | || | || | || | Sbjct 3293537 CCAGTATTGAAATTGACTCTCTCTATGAGGGCATTGACTTCTACACATCCATCACCAGAG 3293478 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAG 552078 | |||||||| | | |||| || || | || | || ||||| || | | Sbjct 3293477 CTCGCTTTGAAGAGCTGAATGCTGACCTGTTCCGCGGCACCCTGGATCCAGTGGAGAAGG 3293418 Query 552079 TTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | | | ||| | ||| |||| || ||| | | ||||| |||||||| |||||||| | Sbjct 3293417 CTCTGCGGGATGCCAAGCTTGACAAGTCCCAGATCCATGATATTGTGCTGGTTGGTGGTT 3293358 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAA 552198 |||| | || || || |||| || || | || |||||||| ||| | | | Sbjct 3293357 CTACTCGTATCCCAAAGATTCAGAAACTGCTGCAGGATTTCTTCAATGGCAAAGAGCTGA 3293298 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | | || | ||||| ||||||||||| || |||||||| Sbjct 3293297 ACAAGAGCATCAATCCTGATGAGGCTGTGGCTTATGGTGC 3293258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029125077263680