Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2684 118 2e-21 seq155 114 2e-20 seq2787 95.1 2e-14 >seq2684 Length=728142 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| | || || | | ||||| || ||| | ||||| | | Sbjct 686711 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 686770 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 || ||| ||||||| ||||| ||||||| |||||||| ||||| || ||||||||||| Sbjct 686771 TTAAGCGCCTTCACCTTCTCTTCCAGCCTGGCGATGCGCTCCAGCTTCCGCCGGCGGCAC 686830 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | ||||||||| || | ||| || |||||||| | || |||||| | Sbjct 686831 TTGGAGGCGGCGATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTCAGCCGCTCCTGGCTC 686890 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 686891 TCCGCGTCCAGCGGCGAC 686908 >seq155 Length=184411 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| ||| || || ||||||||||||||| |||||||||||||||||| ||| Sbjct 7006 GTATACTCCACGATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 6947 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || || ||||||||||||||||| | |||||||| ||| Sbjct 6946 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGT 6887 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 6886 GACTCGATGATGGAGTACCAGAGCTGCTGGGCCTTCACCACCC 6844 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| || || |||| ||| | ||||| || ||||||||||| ||||| Sbjct 10388 CCTTTGCTGACAGGAGAACCCTCGTATGTTTCATAGGGTCCCTGCTCCTTGGCAAGCTCA 10329 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| || | || ||| |||| |||||||| || || |||| | ||| || || | Sbjct 10328 CAGCTGGCTTCCAAAGCACCGTAATAGATGGTCTCGAAGATCTGCTGGTTCAGGCGCTGG 10269 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| || | ||||| | | |||| | ||| |||| ||||| ||||| ||| Sbjct 10268 GCCTCGGGACTCTCAAAGGGGAACCTCATCAGGATGAAGGCATCTGCCAGGCCCTGCACC 10209 Query 213321 CCGATGCCGATGGGTCTGTG 213340 |||||||||||||| | ||| Sbjct 10208 CCGATGCCGATGGGACGGTG 10189 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || |||||||| || |||| ||| | ||| |||||||||||||| Sbjct 12793 TACCTGGAACTCTCCTGAGAGGACTCTCCGTGTGTAGATGTTACTGGTGTAGGGCTCGAT 12734 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | |||||||| ||||| ||||| |||||| || || ||||| |||| | || || Sbjct 12733 GGATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGAAAGGAGAAG 12674 Query 213035 ACTGTTCCTCACTCC 213049 ||||||||| || || Sbjct 12673 ACTGTTCCTAACACC 12659 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| |||||||| ||||| || ||||| | | ||||| || ||||| | | |||| Sbjct 15040 GTTGAGGGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGT 14981 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||||||||| |||||||||||||||| ||| | || ||||| || || | | || Sbjct 14980 TTTCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATCNGGAATCTCAGG 14921 Query 212816 GATGTTCT 212823 |||||||| Sbjct 14920 GATGTTCT 14913 >seq2787 Length=631671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| |||| || || ||| |||||||| | || || | ||| ||||| ||| Sbjct 597041 CTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTTTCAGCCAAAAA 597100 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || |||||||||||||||||||| || |||||||| ||||| || Sbjct 597101 ATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAGC 597150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931495166074880