Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq37 129 4e-24 seq1558 96.9 2e-14 seq75 86.0 4e-11 >seq37 Length=2074313 Score = 129 bits (142), Expect = 4e-24 Identities = 363/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || | || || || ||| ||| || | ||| | || |||| ||| Sbjct 954520 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 954579 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || | || ||||| ||||| | || ||| Sbjct 954580 GTGGAGATCATTGCCAATGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 954639 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || ||||| || || | || | || || ||| || Sbjct 954640 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 954699 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || ||||||||||| | | || || || || | |||||| |||| || || || Sbjct 954700 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCC 954759 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 |||||| || ||||| || ||| | |||| | || || || | || || | Sbjct 954760 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGACAGCGGCAAGCCCAAGGTACAAGTG 954819 Query 474627 CAATACACGCAGGTGAAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| ||| | | | || | ||| | || || | || || ||||| || Sbjct 954820 GAGTACA---AGGGGGAGATGAAGACTTTCTTCCCAGAGGAGATCAGCTCTATGGTCCTA 954876 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| | | || ||| | ||||| || | |||| |||| || || Sbjct 954877 ACCAAGATGAAGGAGATTGCTGAG-GCCTATCTGGGGCGCAAAGTGCAGAATGCCGTCAT 954935 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| || || || || || || || || || || || || || |||||||| || | || Sbjct 954936 TACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 954995 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || |||||||| | |||||||| ||||| || |||||||| || | || ||||| Sbjct 954996 CACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGG 955055 Query 474865 TCTTGATAAGAA 474876 | || ||||| Sbjct 955056 CTTGGACAAGAA 955067 >seq1558 Length=3585338 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 |||||||| || ||| || || | ||| | || ||||| || |||||||||||| Sbjct 3292407 ACTAAAGACAACAACTTGCTGGGCAAGTTTGAGCTGACTGGTATCCCCCCTGCTCCCAGA 3292348 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || || ||||| |||||||| || |||||||||||||| ||||| || || ||||| || Sbjct 3292347 GGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCCAATGGCATCCTGAATGTGTCT 3292288 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 3292287 GCTGTGGATAA 3292277 Score = 91.5 bits (100), Expect = 1e-12 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || || || ||||| ||||| |||| |||||| || || | | | ||||| || Sbjct 3293583 ACCGCGTGNGAGCGTGCCAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATT 3293524 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 || ||||| | ||| || ||||| | | || || || || ||| |||||||| Sbjct 3293523 GACTCTCTCTATGAGGGCATTGACTTCTACACATCCATCACCAGAGCTCGCTTTGAAGAG 3293464 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || | | ||| | ||| | Sbjct 3293463 CTGAATGCTGACCTGTTCCGCGGCACCCTGGATCCAGTGGAGAAGGCTCTGCGGGATGCC 3293404 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || |||||||| || || ||||||| ||||| || || || ||||| || | || ||| Sbjct 3293403 AAGCTTGACAAGTCCCAGATCCATGATATTGTGCTGGTTGGTGGTTCTACTCGTATCCCA 3293344 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || || | || ||||| ||| || | || | || | | Sbjct 3293343 AAGATTC-AGAAACTGCTG-CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 3293286 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||| ||||| || ||||| || Sbjct 3293285 ATCCTGATGAGGCTGTGGCTTATGGTGC 3293258 >seq75 Length=213217 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||| ||||| ||| || | || ||||| ||| Sbjct 77210 CCATCACGACCAGCTCTCCCAATTTCTTGGTAATAGGATTCCATTTCCTTTGGTGCACCA 77269 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 77270 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCT 77329 Query 627889 AC 627890 || Sbjct 77330 AC 77331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268040563838336