Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq459 131 2e-24 seq416 131 2e-24 seq2313 122 1e-21 seq414 122 1e-21 seq155 98.7 1e-14 seq2789 91.5 2e-12 seq852 86.0 8e-11 >seq459 Length=1839245 Score = 131 bits (144), Expect = 2e-24 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| || ||| | || || ||||| ||||||||||| || | ||| ||| Sbjct 4252 GCCAGTTCACCAGGCAGTAAGAGCCGTACGGCAGTCTGGATCTCCCGAGAAGTGATGGTG 4193 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||| ||||| |||||||||| || ||| ||| ||||||| |||| ||||| Sbjct 4192 GAGCGTTTGTTGTAGTGCGCCAGGCGCGAGGCTTCGCCAGCGATGCGCTCGAAGATGTCA 4133 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||||| ||| | |||| |||||||| ||||||||||||| Sbjct 4132 TTGACGAANGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGTGCACC 4073 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 4072 TGCTTCAGCACCTTGTA 4056 >seq416 Length=88659 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| ||||| || ||||||||||| || | | Sbjct 65251 GCTTGGCCAGCTCACCCGGCAGCAACAGCCGCACAGCCGTCTGGATCTCCCGAGAAGTTA 65310 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||||||||| || ||| ||| | ||||||| |||| | Sbjct 65311 TGGTGGAGCGTTTGTTGTAGTGCGCCAGGCGCGAGGCTTCGCCGGCGATGCGCTCGAAGA 65370 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 65371 TGTCGTTAACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCAGTGTCGGGGT 65430 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || |||||||| Sbjct 65431 GCACCTGCTTCAGTACCTTGTA 65452 Score = 122 bits (134), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | | Sbjct 75531 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTTA 75590 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| || ||| ||| | ||||||| |||| | Sbjct 75591 TGGTGGAGCGCTTGTTGTAGTGTGCCAGGCGCGAGGCTTCGCCGGCGATGCGCTCGAAGA 75650 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || ||||| || |||||||||| ||| | |||| |||||||| ||||||| Sbjct 75651 TATCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTATCGGGGT 75710 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 75711 GCACTTGCTTCAGCACCTTGTA 75732 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| ||||| || ||||||||||| || | | Sbjct 57986 GCTTGGCCAGCTCACCCGGCAGCAACAGCCGCACAGCCGTCTGGATCTCCCGAGAAGTTA 58045 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||| || | | || || || | | Sbjct 58046 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCTTCACCGGCAATACGCTCAAAAA 58105 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||| ||||| |||||||| Sbjct 58106 TGTCGTTAACGAAAGAGTTCATGATGCCCATGGCCTTGGAGGAAATGCCTGTGTCGGGGT 58165 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || |||||||| Sbjct 58166 GCACCTGCTTCAGGACCTTGTA 58187 >seq2313 Length=1021 Score = 122 bits (134), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| | |||||| ||||||||||| | | | || Sbjct 556 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCTCACGGCCGTCTGGATCTCCCTGGAGGTGA 497 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | ||||||| || || || | ||||||| |||| | Sbjct 496 TGGTGGAGCGCTTATTGTAATGCGCCAAGCGCGACGCTTCCCCGGCGATGCGCTCGAAGA 437 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 436 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTAGAAGAGATGCCGGTGTCCGGGT 377 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| | ||||||||| Sbjct 376 GGACCTGCTTCAACACCTTGTA 355 >seq414 Length=1865811 Score = 122 bits (134), Expect = 1e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||||||||| || ||||||||||| || | | || Sbjct 1057069 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACTGCTGTCTGGATCTCCCGGGAGGTGA 1057128 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| || || ||||||| || | | Sbjct 1057129 TGGTGGAACGCTTGTTGTAATGGGCCAGGCGGGACGCTTCTCCAGCGATGCGCTCAAAGA 1057188 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| |||| ||||||||| |||||| | Sbjct 1057189 TGTCATTAACGAAGGAGTTCATGATGCCCATCGCCTTGGAGGAGATGCCGGTGTCGGGNT 1057248 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 1057249 GGACCTGCTTCAGCACCTTGTAGA 1057272 >seq155 Length=184411 Score = 98.7 bits (108), Expect = 1e-14 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||| || || ||||||||| | | | || |||||||||||||||||| | || Sbjct 6997 ACGATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 6938 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| |||||||||||| | ||||||||| |||| | | ||| | Sbjct 6937 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGTGACTCGATG 6878 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 |||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 6877 ATGGAGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 6829 >seq2789 Length=4858926 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAA-GCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAA 1592244 || || || ||||| |||||||| | || |||| ||| | ||||||| | || || || Sbjct 2515452 GCTGCAAATTACCTGGACATCAAAGGCT-TGCTTGATGTCACGTGCAAGACAGTTGCAAA 2515394 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || || || |||||||||||||| ||||||||| Sbjct 2515393 CATGATCAAGGGGAAGACTCCAGAAGAAATCCGCAAGACCTTCAACATCAAG 2515342 >seq852 Length=15914 Score = 86.0 bits (94), Expect = 8e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | || ||||| || ||||||||||| || | || Sbjct 1076 GCTTGGCCAGCTCACCAGGAAGCAGGAGCCGCACAGCNGTCTGGATCTCCCGAGAAGTGA 1017 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| | || ||||| || ||||| |||| || |||| | Sbjct 1016 TGGTGGAGCGTTTGTTATAATGTGCCAGGCGAGAAGCCTCACCAGCGATACGCTCGAAGA 957 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || || ||||| | ||| | |||| || |||||| ||||||| Sbjct 956 TGTCATTGACGAAAGAATTCATAATGCCCATAGCCTTGGAAGAAATGCCCGTATCGGGGT 897 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 || ||||||| |||||||| || Sbjct 896 GCCCCTGCTTCAGCACCTTATA 875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106873966944544