Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq414 179 6e-39 seq416 178 2e-38 seq2313 174 2e-37 seq459 168 1e-35 seq852 134 2e-25 seq1669 125 1e-22 seq2787 96.9 5e-14 >seq414 Length=1865811 Score = 179 bits (198), Expect = 6e-39 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||||||||| |||||| ||||||| || || | | Sbjct 1057030 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACAGCGTGCTTGGCCAGCTCTCCTGGGA 1057089 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||||||||| |||| | ||| ||| |||||||| Sbjct 1057090 GCAGCAGGCGCACTGCTGTCTGGATCTCCCGGGAGGTGATGGTGGAACGCTTGTTGTAAT 1057149 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| || || ||||||| || | ||||| || || || ||||||| Sbjct 1057150 GGGCCAGGCGGGACGCTTCTCCAGCGATGCGCTCAAAGATGTCATTAACGAAGGAGTTCA 1057209 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| ||||||||| |||||| || |||||||| |||||||||| Sbjct 1057210 TGATGCCCATCGCCTTGGAGGAGATGCCGGTGTCGGGNTGGACCTGCTTCAGCACCTTGT 1057269 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 1057270 AGACATAGATGGAGTA 1057285 >seq416 Length=88659 Score = 178 bits (196), Expect = 2e-38 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| ||||| |||||| ||||||| || || ||| Sbjct 65212 TGTACTTGGTAACAGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCACCCGGCA 65271 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| || | || ||| ||| ||||| | Sbjct 65272 GCAACAGCCGCACAGCCGTCTGGATCTCCCGAGAAGTTATGGTGGAGCGTTTGTTGTAGT 65331 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||| ||| | ||||||| |||| |||||||| || || ||||||| Sbjct 65332 GCGCCAGGCGCGAGGCTTCGCCGGCGATGCGCTCGAAGATGTCGTTAACGAAGGAGTTCA 65391 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||||||||||||||| || ||||||| Sbjct 65392 TGATGCTCATGGCCTTGGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGTACCTTGT 65451 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 65452 ACACGTAGATCGAGTA 65467 Score = 172 bits (190), Expect = 9e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||||||||| ||||| |||||| ||||||| || || ||| Sbjct 75494 TACTTGGTGACAGCCTTGGTACCCTCGGAGACTGCGTGCTTGGCCAGCTCACCCGGCAGC 75553 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || |||||||| ||||||||||| || | || ||| ||||||||| | | Sbjct 75554 AGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTTATGGTGGAGCGCTTGTTGTAGTGT 75613 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||||||| ||| ||| | ||||||| |||| || || ||||| || ||||||||| Sbjct 75614 GCCAGGCGCGAGGCTTCGCCGGCGATGCGCTCGAAGATATCATTGACGAAGGAGTTCATG 75673 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| ||||||||||| ||||| ||||||||||| Sbjct 75674 ATGCCCATGGCCTTGGACGAGATGCCAGTATCGGGGTGCACTTGCTTCAGCACCTTGTAC 75733 Query 1485712 ACA 1485714 ||| Sbjct 75734 ACA 75736 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| ||||| |||||| ||||||| || || ||| Sbjct 57947 TGTACTTGGTGACAGCCTTGGTACCCTCGGAGACTGCGTGCTTGGCCAGCTCACCCGGCA 58006 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| || | || ||| ||||||||| | Sbjct 58007 GCAACAGCCGCACAGCCGTCTGGATCTCCCGAGAAGTTATGGTGGAGCGCTTGTTGTAGT 58066 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||| || | | || || || | |||||||| || || ||||||| Sbjct 58067 GCGCCAGGCGCGAGGCTTCACCGGCAATACGCTCAAAAATGTCGTTAACGAAAGAGTTCA 58126 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||| ||||| |||||||||||||||||| || ||||||| Sbjct 58127 TGATGCCCATGGCCTTGGAGGAAATGCCTGTGTCGGGGTGCACCTGCTTCAGGACCTTGT 58186 Query 1485710 AAAC 1485713 | || Sbjct 58187 ACAC 58190 >seq2313 Length=1021 Score = 174 bits (192), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 595 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 536 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||| ||||||||||| | || | ||| ||| |||||| || Sbjct 535 GCAGCAGCCTCACGGCCGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTATTGTAAT 476 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||| || || | ||||||| |||| |||||||||||||| ||||||| Sbjct 475 GCGCCAAGCGCGACGCTTCCCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCA 416 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| ||| ||||| |||||||| | |||||||| Sbjct 415 TGATGCCCATGGCCTTAGAAGAGATGCCGGTGTCCGGGTGGACCTGCTTCAACACCTTGT 356 Query 1485710 AAAC 1485713 | || Sbjct 355 ATAC 352 >seq459 Length=1839245 Score = 168 bits (186), Expect = 1e-35 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| |||||||| ||||| ||||| ||||| | |||||||| || ||| Sbjct 4294 TACTTAGTGACAGCCTTGGTGCCCTCAGAGACTGCGTGTTTAGCCAGTTCACCAGGCAGT 4235 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || ||||| ||||||||||| || | ||| ||| ||| ||||| | || Sbjct 4234 AAGAGCCGTACGGCAGTCTGGATCTCCCGAGAAGTGATGGTGGAGCGTTTGTTGTAGTGC 4175 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||||||| ||| ||| ||||||| |||| ||||| ||||| || ||||||||| Sbjct 4174 GCCAGGCGCGAGGCTTCGCCAGCGATGCGCTCGAAGATGTCATTGACGAANGAGTTCATG 4115 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| |||||||||||||||||| ||||||||||| Sbjct 4114 ATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGTAC 4055 Query 1485712 ACA 1485714 ||| Sbjct 4054 ACA 4052 >seq852 Length=15914 Score = 134 bits (148), Expect = 2e-25 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||||||||| ||||| |||||| ||||||| || || | | Sbjct 1115 TGTACTTAGTAACAGCCTTGGTACCCTCGGAGACTGCGTGCTTGGCCAGCTCACCAGGAA 1056 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||||||||| || | ||| ||| ||| |||||| Sbjct 1055 GCAGGAGCCGCACAGCNGTCTGGATCTCCCGAGAAGTGATGGTGGAGCGTTTGTTATAAT 996 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||| |||| || |||| ||||| ||||| || || |||| Sbjct 995 GTGCCAGGCGAGAAGCCTCACCAGCGATACGCTCGAAGATGTCATTGACGAAAGAATTCA 936 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| || |||||| ||||||||| ||||||| |||||||| | Sbjct 935 TAATGCCCATAGCCTTGGAAGAAATGCCCGTATCGGGGTGCCCCTGCTTCAGCACCTTAT 876 Query 1485710 AAAC 1485713 | || Sbjct 875 ACAC 872 >seq1669 Length=3582924 Score = 125 bits (138), Expect = 1e-22 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| || ||| ||||||| || || ||| Sbjct 1285661 TGTACTTGGTGACAGCCTTGGTGCCCTCAGAGACAGCATGCTTGGCCAGCTCACCAGGCA 1285602 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||| | ||| ||| || ||| ||| ||| | || || | Sbjct 1285601 GTAGGAGCCGCACGGCTGTCTGCACCTCCCGGCTGGTGATGGTGGAGCGGTGATT-GTAC 1285543 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| |||||| | | | | || || | | || |||||||| |||||| Sbjct 1285542 TGGGCCAGGCGAGAGGCCTCCGAGGCCAGACGTTCAAAGAGATCATTGACAAAGGAGTTC 1285483 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | || ||||||||| ||| |||||||||||| Sbjct 1285482 ATGATGCTCATGGCCTTAGAGGAGATGCCAGTGTCCGGGTGCACCTGC 1285435 >seq2787 Length=631671 Score = 96.9 bits (106), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||| ||||| || ||||||| ||| || ||| Sbjct 600402 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCAGCCTTCTTNTACATCTGCCAAATGTCGTGG 600461 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| |||||| || || ||||||||||| Sbjct 600462 TACTGGATGGGGAATATGACGAAGCGGCGGGGGTTGTCCCGCAGCAGCGGCTC 600514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915902597418848