Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq37 131 1e-24 seq75 102 6e-16 seq1558 89.7 4e-12 >seq37 Length=2074313 Score = 131 bits (144), Expect = 1e-24 Identities = 903/1441 (63%), Gaps = 28/1441 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | ||||| || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 955981 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 955922 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| || | | ||| | ||||| || || || | Sbjct 955921 CTCCACGGGGCGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 955862 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | ||||||||| | | |||| | || | || || ||||||| Sbjct 955861 TCGTCATAGCCCTCTCACCCTCGTATACCTGGACAAGGACGCTGCTCTGGTTGTCTGAAT 955802 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 955801 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCT 955743 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || | || ||||| |||||||| | || | Sbjct 955742 GTCATCACTCCACCAGCTGTCTCAATGCCCAAGGACAGAGGGGTGACATCCAACAGCAGC 955683 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 955682 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCG 955623 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 955622 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 955563 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 || || | | | ||| |||||||| | || || || || | ||||| || || Sbjct 955562 TGTAGCAGCTTTTGGATCTTGGGAATACGGGTAGAGCCACCCACCAGCACAATCTCTTGG 955503 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962 | ||| || || || || | ||| | | | || || || || || || | Sbjct 955502 ATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCCA 955443 Query 281963 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATAA 282019 | || | |||| | || || || || || | |||| ||| || || || Sbjct 955442 CGGAAGAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATGGAGGTG----TAGAA 955387 Query 282020 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 ||||| || ||||| | || |||| ||||| ||| ||| || ||||| || | Sbjct 955386 GTCAATACCCTCGAAGAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGGT 955327 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 282138 || || || | ||||| ||||| | || | | | ||| ||| ||| | Sbjct 955326 GCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACCGCTC--GCTTGTTGCCAGCA 955269 Query 282139 ATCTGTT--TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTAT 282194 || | || | || | |||||| ||||| ||| | ||| | || | ||| || | Sbjct 955268 ATGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAA--ATGGTTCACCATACGGTTGT 955211 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 |||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 955210 CAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCAT 955151 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | |||| | | | | ||||| || || || |||| ||||| || || |||| Sbjct 955150 CCTCAATGGTAAGGATGGACACATCGAAAGTACCCCCTCCCAAGTCAAAGATGAGCACAT 955091 Query 282315 TCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | || || | || || || | ||||| || | |||||| || || | Sbjct 955090 TCTTCTCACCAGCTCGAGTACCCTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGG 955031 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| ||||| | || |||||||| |||| || | || |||||||| ||||| | Sbjct 955030 GCTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCT 954971 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT-CTGTTACTTCTTTT 282487 | | || || ||||| || || ||||| || ||||| ||||||| ||| |||| Sbjct 954970 GGCGCTGGGAGTCGTTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGC-ACTTTGCGC 954912 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | ||| || || | | ||||| || ||| | ||| || || | ||| Sbjct 954911 CCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTCT 954852 Query 282548 GGAGAATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 282606 || ||| | | | || || | || |||| | | || || | | Sbjct 954851 GG-GAAGAAAGTCTTCATCTCCCCCTTGTACTCCACTTGTACCTTGGGCTTGCCGCTGTC 954793 Query 282607 ATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 282666 ||| | || || ||||| | |||||||| || || || | |||||| | | | Sbjct 954792 ATTCACCACACGGAAGGGCCAGTGCTTCATATCGGACTGCACCGTGGGGTCATCATACTT 954733 Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726 | || || | || || |||||||| || || ||||| || || | || | || | Sbjct 954732 GCGGCCGATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTT 954673 Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786 ||||||||||| || || || | ||||| || || || | ||||| || || || Sbjct 954672 CTTGGCTGCATCACCGATGAGGCGCTCTGTATCAGTGAAGGCCACATAGCTGGGTGTGGT 954613 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 ||| || ||||| ||||| ||||| || || ||||| |||| || | ||||| || || Sbjct 954612 GCGGTTCCCTTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCA 954553 Query 282847 A 282847 | Sbjct 954552 A 954552 >seq75 Length=213217 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 77335 TGTTGTAGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 77276 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 77275 TCATTATGGTGCACCAAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 77216 Query 131296 TGATGG 131301 |||||| Sbjct 77215 TGATGG 77210 >seq1558 Length=3585338 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| |||||| || || ||||||||||| | |||||| || |||||||| Sbjct 3292277 TTATCCACAGCAGACACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATC 3292336 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || ||||| ||||||| ||||| || || | ||| | ||||| || Sbjct 3292337 TGAGGTACACCTCTGGGAGCAGGGGGGATACCAGTCAGCTCAAACTTGCCCAGCAAGTTG 3292396 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTC 281565 || |||||||| | ||||| ||||| Sbjct 3292397 TTGTCTTTAGTCATGGCACGTTCTCCCTC 3292425 Score = 87.8 bits (96), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | ||||||||||| || | ||| |||| | || || ||||| || |||| Sbjct 3294822 CAAACACTGTATTGGTTGGNTTCATCGCAACTTGGTTCTTTGCAGCATCACCGATCAACC 3294881 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | || || |||||| || || ||||| ||||| || |||| Sbjct 3294882 TCTCGGTGTCTGTGAAGGCCACGTAGCTTGGAGTGGTCCGGTTACCCTGATCGTTGGCAA 3294941 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| || ||||||| ||||| | || || || | ||||| Sbjct 3294942 TGATTTCCACCTTCCCATGCTGGAATACACCAACACAGGAGTAGGTGGTGCCAAGATCAA 3295001 Query 282870 TACCAATAGC 282879 | |||| ||| Sbjct 3295002 TTCCAACAGC 3295011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740471722458432