Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1559 118 2e-21 >seq1559 Length=1331468 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 922138 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATC 922079 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || ||||| Sbjct 922078 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 922019 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 922018 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 921976 Score = 100 bits (110), Expect = 6e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||||||||||||| ||||||| || || ||||| |||||||| | |||||||| Sbjct 919849 AGCTTTTTTCGGAGCTCAGATGAATTCATTTATTCATGTCATTATGTACATGTATTATGG 919790 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| |||| ||| |||| || | |||||||| || || | || || Sbjct 919789 ATTAGCTGCCTGTGGCCCTAAATTTCAAAAATACCTGTGGTGGAAACGATACTTGACCAT 919730 Query 60430 AATGCAATTGTTA 60442 | |||| ||| || Sbjct 919729 ATTGCAGTTGGTA 919717 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 919218 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 919159 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 || |||| || ||| || || | ||| |||| || || || || |||||||||||| Sbjct 919158 AAGTGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCCTGTTTGGTAAC 919099 Query 60563 TTCTATTTTAGAACATACAAGA 60584 ||||| | | | ||||| |||| Sbjct 919098 TTCTACTATCGGACATATAAGA 919077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981786542535648