Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq121 131 2e-25 >seq121 Length=191400 Score = 131 bits (144), Expect = 2e-25 Identities = 538/842 (64%), Gaps = 14/842 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || ||||| || || || || || || || || || || || || ||||| Sbjct 135224 ATCCAGTTTAGATCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 135165 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | |||||||| || |||| |||||||| || || | Sbjct 135164 GGTGGGTAGGGTGCACCTTTGGATACATCCCCTTCAAAGTACTGCCACTTGACAAATCGG 135105 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||||| |||| |||| || | || || || || || Sbjct 135104 GCCAGTGCATTCATGTCAGAAACATCGTATTTGT-CACTAGAAGAAACTGCACCTGGGAC 135046 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | | | |||||| | || ||||||| || || ||||| || || || || || | Sbjct 135045 TTCAGCGATTCTCTGAATGGTTGCCCACAAGTACTCATCTGGGCTGTAAGTGTCTTTTGC 134986 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 ||| || ||||||| | | |||| | | || | ||| || | || Sbjct 134985 CCATTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCT 134929 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || | | || Sbjct 134928 GCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGNTT 134869 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | ||| |||| || ||||||| | Sbjct 134868 GTCTATGCCTGTGTTCTTTATTTTACCATCAATAACCTCGTGGTGTTTTTTCCACCTTAC 134809 Query 162576 CATCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAG 162635 ||| | || | | ||| || || | ||||| ||| | ||| || | Sbjct 134808 TTCTTTATTAACAGGCATTTTTTCTGTTTCCAAGCTGTTTGCACCTTTAAGGGCTTTTAA 134749 Query 162636 CTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAAC 162695 | || || || | |||||||| | |||||||| |||| ||||| || || | Sbjct 134748 TTTCTCTACAATTTCCTGGTTGGTCTTTATTGGAAAGTCCATGCCACAGAGGTTTATTAG 134689 Query 162696 ATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGAC 162755 |||||||| || || || ||| ||||| | | ||||| | || ||||| || Sbjct 134688 GTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCAC 134629 Query 162756 GCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAA 162815 | ||||| || || || || || ||||| ||| | | | | ||||||||| || || Sbjct 134628 TCTGCTCCATGAAGCATATACAACACTCTCTAACTGACTAGAAATAAAGACATTATCAAA 134569 Query 162816 ACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTAC 162872 ||| || ||||| ||| |||| || || | || | || || ||| | || || Sbjct 134568 ACATGAGACTATTCCCCTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAAC 134512 Query 162873 GTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTC 162932 || | |||||| | |||||||||||| ||||| | ||| || | ||| || | |||||| Sbjct 134511 ATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGACCTTAGAAGTCTGTCAAGCATCTC 134452 Query 162933 TATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || || || | ||||| || || || |||| || || || || || || ||||| Sbjct 134451 AATTTTGTGATAAACCACTATTGAGTAAGCTACTGGAAATTCTGCTTCTTCATTGCTGAG 134392 Query 162993 AG 162994 || Sbjct 134391 AG 134390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578408631347200