Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq416 152 7e-31 seq459 145 1e-28 seq2313 143 4e-28 seq414 127 3e-23 seq852 104 3e-16 seq155 102 1e-15 seq2787 95.1 2e-13 seq1669 91.5 2e-12 >seq416 Length=88659 Score = 152 bits (168), Expect = 7e-31 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || ||||||||||||||| || ||| |||| || |||| ||||| Sbjct 65452 TACAAGGTACTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCCAAGGCCATG 65399 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||| ||| ||| Sbjct 65398 AGCATCATGAACTCCTTCGTTAACGACATCTTCGAGCGCATCGCCGGCGAAGCCTCGCGC 65339 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||| ||| ||| || | || ||||||||||| || ||||| Sbjct 65338 CTGGCGCACTACAACAAACGCTCCACCATAACTTCTCGGGAGATCCAGACGGCTGTGCGG 65279 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| |||||| |||||||||||||||| Sbjct 65278 CTGTTGCTGCCGGGTGAGCTGGCCAAGCACGCAGTCTCCGAGGGCACCA 65230 Score = 143 bits (158), Expect = 4e-28 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||| ||||||||| || ||| |||| || |||| ||||| Sbjct 75732 TACAAGGTGCTGAAGCAAGTGCACCCCGATAC---TGG--CATC-TCGTCCAAGGCCATG 75679 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| || || |||| ||||||| | ||| ||| ||| Sbjct 75678 GGCATCATGAACTCCTTCGTCAATGATATCTTCGAGCGCATCGCCGGCGAAGCCTCGCGC 75619 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| || | || ||||||||||| |||||||| Sbjct 75618 CTGGCACACTACAACAAGCGCTCCACCATAACTTCTCGGGAGATCCAGACGGCCGTGCGG 75559 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| |||||| ||||||||||| |||| Sbjct 75558 CTCCTGCTGCCGGGTGAGCTGGCCAAGCACGCAGTCTCCGAGGGTACCA 75510 Score = 131 bits (144), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || ||||||||||||||| || | ||| ||| |||| ||||| Sbjct 58187 TACAAGGTCCTGAAGCAGGTGCACCCCGACACAGG-----CATT-TCCTCCAAGGCCATG 58134 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| | || || || | | || ||| ||| Sbjct 58133 GGCATCATGAACTCTTTCGTTAACGACATTTTTGAGCGTATTGCCGGTGAAGCCTCGCGC 58074 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| || | || ||||||||||| || ||||| Sbjct 58073 CTGGCGCACTACAACAAGCGCTCCACCATAACTTCTCGGGAGATCCAGACGGCTGTGCGG 58014 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| |||||| ||||||||||| |||| Sbjct 58013 CTGTTGCTGCCGGGTGAGCTGGCCAAGCACGCAGTCTCCGAGGGTACCA 57965 >seq459 Length=1839245 Score = 145 bits (160), Expect = 1e-28 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || |||| ||||| Sbjct 4056 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCCAAGGCCATG 4109 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| |||| ||||||| ||| ||| ||| Sbjct 4110 GGCATCATGAACTCNTTCGTCAATGACATCTTCGAGCGCATCGCTGGCGAAGCCTCGCGC 4169 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||| ||| ||| ||| | || ||||||||||| ||||| || Sbjct 4170 CTGGCGCACTACAACAAACGCTCCACCATCACTTCTCGGGAGATCCAGACTGCCGTACGG 4229 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || |||||||| | ||||| ||||| |||||||||| Sbjct 4230 CTCTTACTGCCTGGTGAACTGGCTAAACACGCAGTCTCTGAGGGCACCA 4278 >seq2313 Length=1021 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| ||||| |||| |||| || ||| ||||| Sbjct 355 TACAAGGTGTTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCTTCTAAGGCCATG 408 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| |||| ||||||| | || || ||| Sbjct 409 GGCATCATGAACTCCTTTGTCAACGACATCTTCGAGCGCATCGCCGGGGAAGCGTCGCGC 468 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | ||| |||||| ||| ||| | | | ||||||||||| |||||| | Sbjct 469 TTGGCGCATTACAATAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGAGG 528 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 529 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 577 >seq414 Length=1865811 Score = 127 bits (140), Expect = 3e-23 Identities = 175/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| || ||| |||| |||| Sbjct 1057285 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCANCCCGACACCGG-----CATC- 1057232 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| | ||| ||||||||||| || || || ||||| | || ||||||| Sbjct 1057231 TCCTCCAAGGCGATGGGCATCATGAACTCCTTCGTTAATGACATCTTTGAGCGCATCGCT 1057172 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || |||||||| | | ||||||||| ||| ||| | | || |||||| Sbjct 1057171 GGAGAAGCGTCCCGCCTGGCCCATTACAACAAGCGTTCCACCATCACCTCCCGGGAGATC 1057112 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || ||||||||| | | | || || ||||||| |||||| ||||| |||||| Sbjct 1057111 CAGACAGCAGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCTGTCTCAGAGGGC 1057052 Query 725139 ACCA 725142 |||| Sbjct 1057051 ACCA 1057048 >seq852 Length=15914 Score = 104 bits (114), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || |||||||| ||||||| ||||||| || |||| | || | |||| | ||| Sbjct 875 TATAAGGTGCTGAAGCAGGGGCACCCCGATAC----GGGCATTTCTTC--CAAGGCTATG 928 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 || ||||| || || ||||| ||||| |||| || |||| ||||| |||| Sbjct 929 GGCATTATGAATTCTTTCGTCAATGACATCTTCGAGCGTATCGCTGGTGAGGCTTCTCGC 988 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | ||||| ||| ||| ||| | || ||||||||||| || ||||| Sbjct 989 CTGGCACATTATAACAAACGCTCCACCATCACTTCTCGGGAGATCCAGACNGCTGTGCGG 1048 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | | || || ||||||| |||||| ||||||||||| |||| Sbjct 1049 CTCCTGCTTCCTGGTGAGCTGGCCAAGCACGCAGTCTCCGAGGGTACCA 1097 >seq155 Length=184411 Score = 102 bits (112), Expect = 1e-15 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| |||| ||| | | || | ||||||||||| ||||||||| ||||| Sbjct 6861 CAGCTCTGGTACTCCATCATCGAGTCACAGACTGAGACCGGCACACCCTACATGCTCTAC 6920 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC--CA 262208 || ||| || |||| || ||||||||||||||||||||||||| || | || || Sbjct 6921 AAAGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCA--TCAAATGCAGCA 6978 Query 262209 ACCTGTGCACCGAGATCGT 262227 ||||||| || || ||||| Sbjct 6979 ACCTGTGTACAGAAATCGT 6997 >seq2787 Length=631671 Score = 95.1 bits (104), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| |||||| ||| | |||||||||| ||||| Sbjct 600514 GAGCCGCTGCTGCGGGACAACCCCCGCCGCTTCGTCATATTCCCCATCCAGTACCACGAC 600455 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| || ||||| ||||||||||| ||||| || |||||||| Sbjct 600454 ATTTGGCAGATGTA-NAAGAAGGCTGAGGCCTCCTTCTGGACGGCGGAGGAGGT 600402 >seq1669 Length=3582924 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| |||||||| || | | || || | | | | ||| Sbjct 1285466 AAGGCCATGAGCATCATGAACTCCTTTGTCAATGATCTCTTTGAACGTCTGGCCTCGGAG 1285525 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| ||||||||| | | ||| | ||| ||| ||| || || ||| | ||||| Sbjct 1285526 GCCTCTCGCCTGGCCCAGTACAATCACCGCTCCACCATCACCAGCCGGGAGGTGCAGACA 1285585 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| || | ||| || || ||||||| ||| || ||||| |||||||||| Sbjct 1285586 GCCGTGCGGCTCCTACTGCCTGGTGAGCTGGCCAAGCATGCTGTCTCTGAGGGCACCA 1285643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177499467659584