Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2913 129 8e-25 seq2787 129 8e-25 >seq2913 Length=504153 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || || || ||||| || || | ||| | Sbjct 490711 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 490652 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 490651 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 490592 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 490591 CAACCACTCTCTCACC 490576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || ||||||||||| || ||||||||||||| ||||| |||||| ||| Sbjct 485505 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAAATAAAGTAT 485446 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||||||| | | ||| || ||||||| Sbjct 485445 TTTTCATCTGCTTTCAGCTTGTTCCAGT 485418 >seq2787 Length=631671 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | |||||||||||| |||||||||||||||| || | |||| Sbjct 597030 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 597089 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| ||||| |||||||| ||||| |||||||| || | Sbjct 597090 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 597149 Query 39759 CAAC 39762 | || Sbjct 597150 CTAC 597153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686881048884480